Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0985 and Atu0986 are separated by 294 nucleotides Atu0986 and Atu0987 are separated by 50 nucleotides Atu0987 and Atu0988 are separated by 43 nucleotides
Atu0985: Atu0985 - permease, at 980,681 to 981,616
Atu0985
Atu0986: Atu0986 - hypothetical protein, at 981,911 to 982,099
Atu0986
Atu0987: Atu0987 - DNA polymerase, at 982,150 to 983,040
Atu0987
Atu0988: Atu0988 - molecular chaperone, Hsp70 family, at 983,084 to 984,382
Atu0988
Position (kb) 981
982
983 Strain fitness (log2 ratio) -1
0
1 at 980.951 kb on - strand, within Atu0985 at 980.997 kb on - strand, within Atu0985 at 981.045 kb on - strand, within Atu0985 at 981.173 kb on - strand, within Atu0985 at 981.186 kb on - strand, within Atu0985 at 981.382 kb on - strand, within Atu0985 at 981.468 kb on + strand, within Atu0985 at 981.488 kb on + strand, within Atu0985 at 981.560 kb on + strand at 981.612 kb on + strand at 981.612 kb on + strand at 981.620 kb on - strand at 981.640 kb on - strand at 981.640 kb on - strand at 981.695 kb on - strand at 981.695 kb on - strand at 981.695 kb on - strand at 981.773 kb on - strand at 981.782 kb on + strand at 981.790 kb on - strand at 981.790 kb on - strand at 981.832 kb on - strand at 981.953 kb on - strand, within Atu0986 at 982.097 kb on - strand at 982.133 kb on + strand at 982.133 kb on + strand at 982.141 kb on - strand at 982.141 kb on - strand at 983.091 kb on + strand at 983.091 kb on + strand at 983.091 kb on + strand at 983.099 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 980,951 - Atu0985 0.29 +0.2 980,997 - Atu0985 0.34 +0.3 981,045 - Atu0985 0.39 -0.1 981,173 - Atu0985 0.53 +0.6 981,186 - Atu0985 0.54 -0.9 981,382 - Atu0985 0.75 +0.1 981,468 + Atu0985 0.84 -0.2 981,488 + Atu0985 0.86 -1.5 981,560 + -0.4 981,612 + +0.3 981,612 + -0.6 981,620 - -0.1 981,640 - +0.7 981,640 - -0.4 981,695 - -0.2 981,695 - -1.0 981,695 - +0.1 981,773 - +0.3 981,782 + -1.0 981,790 - -0.0 981,790 - -0.1 981,832 - +0.3 981,953 - Atu0986 0.22 +0.5 982,097 - -0.1 982,133 + -0.8 982,133 + -0.1 982,141 - +0.6 982,141 - -0.3 983,091 + +0.5 983,091 + -0.5 983,091 + -0.1 983,099 - -0.2
Or see this region's nucleotide sequence