Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0884 and Atu0885 are separated by 4 nucleotides Atu0885 and Atu0886 are separated by 104 nucleotides Atu0886 and Atu0887 are separated by 21 nucleotides Atu0887 and Atu0888 are separated by 204 nucleotides
Atu0884: Atu0884 - hypothetical protein, at 878,210 to 878,920
Atu0884
Atu0885: Atu0885 - hypothetical protein, at 878,925 to 879,239
Atu0885
Atu0886: Atu0886 - hypothetical protein, at 879,344 to 879,910
Atu0886
Atu0887: Atu0887 - acetyltransferase, at 879,932 to 880,420
Atu0887
Atu0888: Atu0888 - transcriptional regulator, MerR family, at 880,625 to 881,038
Atu0888
Position (kb) 879
880 Strain fitness (log2 ratio) -2
-1
0
1
2 at 878.413 kb on - strand, within Atu0884 at 878.417 kb on + strand, within Atu0884 at 878.543 kb on - strand, within Atu0884 at 878.717 kb on + strand, within Atu0884 at 878.724 kb on - strand, within Atu0884 at 878.740 kb on + strand, within Atu0884 at 878.748 kb on - strand, within Atu0884 at 879.067 kb on + strand, within Atu0885 at 879.094 kb on + strand, within Atu0885 at 879.158 kb on - strand, within Atu0885 at 879.212 kb on + strand at 879.257 kb on - strand at 879.283 kb on - strand at 879.293 kb on + strand at 879.390 kb on + strand at 879.580 kb on - strand, within Atu0886 at 879.801 kb on + strand, within Atu0886 at 879.953 kb on + strand at 880.134 kb on + strand, within Atu0887 at 880.144 kb on + strand, within Atu0887 at 880.178 kb on - strand, within Atu0887 at 880.181 kb on - strand, within Atu0887 at 880.218 kb on + strand, within Atu0887 at 880.280 kb on - strand, within Atu0887 at 880.311 kb on + strand, within Atu0887 at 880.356 kb on - strand, within Atu0887 at 880.396 kb on + strand at 880.396 kb on + strand at 880.396 kb on + strand at 880.555 kb on - strand at 880.555 kb on - strand at 880.623 kb on + strand at 880.631 kb on - strand at 880.631 kb on - strand at 880.671 kb on + strand, within Atu0888 at 880.707 kb on + strand, within Atu0888 at 880.818 kb on - strand, within Atu0888 at 880.867 kb on - strand, within Atu0888 at 880.872 kb on - strand, within Atu0888
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 878,413 - Atu0884 0.29 -0.6 878,417 + Atu0884 0.29 +0.2 878,543 - Atu0884 0.47 +2.1 878,717 + Atu0884 0.71 -0.3 878,724 - Atu0884 0.72 -0.3 878,740 + Atu0884 0.75 -0.2 878,748 - Atu0884 0.76 +0.1 879,067 + Atu0885 0.45 +0.1 879,094 + Atu0885 0.54 -0.2 879,158 - Atu0885 0.74 -0.9 879,212 + -0.2 879,257 - -0.3 879,283 - +0.1 879,293 + +0.3 879,390 + +0.5 879,580 - Atu0886 0.42 -2.0 879,801 + Atu0886 0.81 -0.5 879,953 + +0.6 880,134 + Atu0887 0.41 -0.5 880,144 + Atu0887 0.43 -0.1 880,178 - Atu0887 0.50 +0.2 880,181 - Atu0887 0.51 +0.0 880,218 + Atu0887 0.58 -0.2 880,280 - Atu0887 0.71 -0.6 880,311 + Atu0887 0.78 +0.4 880,356 - Atu0887 0.87 +0.1 880,396 + -0.3 880,396 + +0.4 880,396 + -0.6 880,555 - +0.4 880,555 - +0.4 880,623 + -0.1 880,631 - +0.1 880,631 - -0.1 880,671 + Atu0888 0.11 +0.0 880,707 + Atu0888 0.20 -0.3 880,818 - Atu0888 0.47 -0.3 880,867 - Atu0888 0.58 -0.9 880,872 - Atu0888 0.60 -0.2
Or see this region's nucleotide sequence