Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0670 and Atu8085 overlap by 4 nucleotides Atu8085 and Atu0671 are separated by 25 nucleotides Atu0671 and Atu0672 are separated by 207 nucleotides
Atu0670: Atu0670 - 3-methyladenine-DNA glycosylase, at 666,323 to 666,952
Atu0670
Atu8085: Atu8085 - hypothetical protein, at 666,949 to 667,392
Atu8085
Atu0671: Atu0671 - hypothetical protein, at 667,418 to 668,335
Atu0671
Atu0672: Atu0672 - transcriptional regulator, LysR family, at 668,543 to 669,460
Atu0672
Position (kb) 667
668
669 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.423 kb on - strand, within Atu0670 at 666.429 kb on - strand, within Atu0670 at 666.460 kb on + strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.506 kb on - strand, within Atu0670 at 666.511 kb on - strand, within Atu0670 at 666.577 kb on + strand, within Atu0670 at 666.579 kb on + strand, within Atu0670 at 666.703 kb on + strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.752 kb on - strand, within Atu0670 at 666.765 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.865 kb on + strand, within Atu0670 at 666.873 kb on - strand, within Atu0670 at 666.876 kb on - strand, within Atu0670 at 667.063 kb on - strand, within Atu8085 at 667.063 kb on - strand, within Atu8085 at 667.149 kb on + strand, within Atu8085 at 667.156 kb on - strand, within Atu8085 at 667.181 kb on - strand, within Atu8085 at 667.221 kb on - strand, within Atu8085 at 667.266 kb on + strand, within Atu8085 at 667.266 kb on + strand, within Atu8085 at 667.282 kb on - strand, within Atu8085 at 667.321 kb on + strand, within Atu8085 at 667.385 kb on - strand at 667.387 kb on + strand at 667.406 kb on + strand at 667.414 kb on - strand at 667.416 kb on + strand at 667.416 kb on + strand at 667.434 kb on + strand at 667.578 kb on - strand, within Atu0671 at 667.789 kb on - strand, within Atu0671 at 667.797 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 668.151 kb on + strand, within Atu0671 at 668.167 kb on + strand, within Atu0671 at 668.168 kb on + strand, within Atu0671 at 668.244 kb on + strand at 668.404 kb on + strand at 668.445 kb on + strand at 668.457 kb on + strand at 668.494 kb on - strand at 668.547 kb on + strand at 668.599 kb on - strand at 668.599 kb on - strand at 668.834 kb on + strand, within Atu0672 at 668.834 kb on + strand, within Atu0672 at 668.842 kb on - strand, within Atu0672 at 668.868 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.953 kb on + strand, within Atu0672 at 668.956 kb on - strand, within Atu0672 at 668.975 kb on - strand, within Atu0672 at 669.002 kb on + strand, within Atu0672 at 669.011 kb on + strand, within Atu0672 at 669.033 kb on + strand, within Atu0672 at 669.059 kb on - strand, within Atu0672 at 669.083 kb on - strand, within Atu0672 at 669.112 kb on + strand, within Atu0672 at 669.119 kb on - strand, within Atu0672 at 669.122 kb on - strand, within Atu0672 at 669.133 kb on + strand, within Atu0672 at 669.133 kb on + strand, within Atu0672
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 666,423 - Atu0670 0.16 -0.3 666,429 - Atu0670 0.17 +0.3 666,460 + Atu0670 0.22 -1.0 666,506 - Atu0670 0.29 -0.8 666,506 - Atu0670 0.29 -0.4 666,511 - Atu0670 0.30 -0.0 666,577 + Atu0670 0.40 +0.1 666,579 + Atu0670 0.41 +0.8 666,703 + Atu0670 0.60 -0.2 666,752 - Atu0670 0.68 +1.1 666,752 - Atu0670 0.68 -0.1 666,765 + Atu0670 0.70 -0.8 666,865 + Atu0670 0.86 -0.0 666,865 + Atu0670 0.86 -0.1 666,873 - Atu0670 0.87 -0.1 666,876 - Atu0670 0.88 +0.1 667,063 - Atu8085 0.26 +0.1 667,063 - Atu8085 0.26 -0.5 667,149 + Atu8085 0.45 +0.4 667,156 - Atu8085 0.47 -0.6 667,181 - Atu8085 0.52 -0.3 667,221 - Atu8085 0.61 -0.0 667,266 + Atu8085 0.71 +0.3 667,266 + Atu8085 0.71 -0.4 667,282 - Atu8085 0.75 -0.2 667,321 + Atu8085 0.84 +0.6 667,385 - +0.3 667,387 + -0.8 667,406 + -0.1 667,414 - -0.0 667,416 + -0.1 667,416 + +1.9 667,434 + +1.0 667,578 - Atu0671 0.17 +0.7 667,789 - Atu0671 0.40 +0.1 667,797 + Atu0671 0.41 +0.9 667,876 + Atu0671 0.50 +0.6 667,876 + Atu0671 0.50 +1.2 667,876 + Atu0671 0.50 +0.1 668,151 + Atu0671 0.80 -0.2 668,167 + Atu0671 0.82 +1.3 668,168 + Atu0671 0.82 +0.1 668,244 + -0.1 668,404 + -0.1 668,445 + +0.1 668,457 + +0.2 668,494 - +1.2 668,547 + -0.2 668,599 - +0.8 668,599 - +0.1 668,834 + Atu0672 0.32 +0.6 668,834 + Atu0672 0.32 -0.0 668,842 - Atu0672 0.33 -0.2 668,868 + Atu0672 0.35 +1.1 668,948 + Atu0672 0.44 +0.0 668,948 + Atu0672 0.44 +0.9 668,953 + Atu0672 0.45 +0.0 668,956 - Atu0672 0.45 +0.2 668,975 - Atu0672 0.47 -0.0 669,002 + Atu0672 0.50 +0.5 669,011 + Atu0672 0.51 -2.1 669,033 + Atu0672 0.53 +0.0 669,059 - Atu0672 0.56 -0.2 669,083 - Atu0672 0.59 +0.6 669,112 + Atu0672 0.62 +0.3 669,119 - Atu0672 0.63 +0.3 669,122 - Atu0672 0.63 -1.9 669,133 + Atu0672 0.64 +0.2 669,133 + Atu0672 0.64 +0.4
Or see this region's nucleotide sequence