Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0609 and Atu0610 are separated by 81 nucleotides Atu0610 and Atu0611 are separated by 11 nucleotides Atu0611 and Atu0612 are separated by 4 nucleotides
Atu0609: Atu0609 - ABC transporter, substrate binding protein (putrescine), at 596,390 to 597,487
Atu0609
Atu0610: Atu0610 - ABC transporter, nucleotide binding/ATPase protein, at 597,569 to 598,726
Atu0610
Atu0611: Atu0611 - ABC transporter, membrane spanning protein, at 598,738 to 599,646
Atu0611
Atu0612: Atu0612 - ABC transporter, membrane spanning protein, at 599,651 to 600,463
Atu0612
Position (kb) 597
598
599 Strain fitness (log2 ratio) -2
-1
0
1 at 596.579 kb on + strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.620 kb on - strand, within Atu0609 at 596.688 kb on + strand, within Atu0609 at 596.712 kb on - strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.818 kb on + strand, within Atu0609 at 596.826 kb on - strand, within Atu0609 at 596.927 kb on + strand, within Atu0609 at 597.043 kb on - strand, within Atu0609 at 597.164 kb on - strand, within Atu0609 at 597.178 kb on + strand, within Atu0609 at 597.204 kb on - strand, within Atu0609 at 597.296 kb on + strand, within Atu0609 at 597.322 kb on + strand, within Atu0609 at 597.376 kb on + strand, within Atu0609 at 597.376 kb on + strand, within Atu0609 at 597.407 kb on + strand at 597.409 kb on + strand at 597.429 kb on + strand at 597.446 kb on + strand at 597.456 kb on - strand at 597.469 kb on + strand at 597.477 kb on - strand at 597.477 kb on - strand at 597.510 kb on - strand at 597.579 kb on - strand at 597.606 kb on + strand at 597.788 kb on - strand, within Atu0610 at 597.809 kb on - strand, within Atu0610 at 597.868 kb on - strand, within Atu0610 at 597.939 kb on + strand, within Atu0610 at 597.957 kb on - strand, within Atu0610 at 597.972 kb on + strand, within Atu0610 at 598.001 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.122 kb on + strand, within Atu0610 at 598.130 kb on - strand, within Atu0610 at 598.208 kb on - strand, within Atu0610 at 598.244 kb on + strand, within Atu0610 at 598.249 kb on + strand, within Atu0610 at 598.396 kb on + strand, within Atu0610 at 598.405 kb on + strand, within Atu0610 at 598.408 kb on + strand, within Atu0610 at 598.468 kb on + strand, within Atu0610 at 598.476 kb on - strand, within Atu0610 at 598.638 kb on - strand at 598.733 kb on - strand at 598.769 kb on + strand at 599.067 kb on - strand, within Atu0611 at 599.207 kb on + strand, within Atu0611 at 599.208 kb on + strand, within Atu0611 at 599.225 kb on - strand, within Atu0611 at 599.243 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.477 kb on + strand, within Atu0611 at 599.563 kb on - strand at 599.601 kb on - strand at 599.637 kb on + strand at 599.645 kb on - strand at 599.645 kb on - strand at 599.656 kb on - strand at 599.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 596,579 + Atu0609 0.17 -0.0 596,620 - Atu0609 0.21 -0.2 596,620 - Atu0609 0.21 -0.2 596,688 + Atu0609 0.27 -0.2 596,712 - Atu0609 0.29 -0.2 596,818 + Atu0609 0.39 +0.1 596,818 + Atu0609 0.39 +1.0 596,826 - Atu0609 0.40 -0.7 596,927 + Atu0609 0.49 +0.2 597,043 - Atu0609 0.59 -0.3 597,164 - Atu0609 0.70 -0.3 597,178 + Atu0609 0.72 +0.0 597,204 - Atu0609 0.74 +0.3 597,296 + Atu0609 0.83 +0.8 597,322 + Atu0609 0.85 -0.2 597,376 + Atu0609 0.90 -0.0 597,376 + Atu0609 0.90 -0.0 597,407 + +0.1 597,409 + +0.9 597,429 + +0.2 597,446 + -0.6 597,456 - -0.1 597,469 + +0.3 597,477 - -0.5 597,477 - -0.2 597,510 - -0.3 597,579 - +1.0 597,606 + +1.0 597,788 - Atu0610 0.19 -0.1 597,809 - Atu0610 0.21 +1.2 597,868 - Atu0610 0.26 -0.8 597,939 + Atu0610 0.32 +0.3 597,957 - Atu0610 0.34 -0.1 597,972 + Atu0610 0.35 +0.4 598,001 + Atu0610 0.37 +0.8 598,081 + Atu0610 0.44 +0.6 598,081 + Atu0610 0.44 +0.2 598,122 + Atu0610 0.48 +0.9 598,130 - Atu0610 0.48 -2.2 598,208 - Atu0610 0.55 +0.2 598,244 + Atu0610 0.58 +0.9 598,249 + Atu0610 0.59 -0.4 598,396 + Atu0610 0.71 +0.6 598,405 + Atu0610 0.72 -0.1 598,408 + Atu0610 0.72 +0.3 598,468 + Atu0610 0.78 +0.1 598,476 - Atu0610 0.78 +0.5 598,638 - -0.9 598,733 - -0.5 598,769 + -0.2 599,067 - Atu0611 0.36 +0.8 599,207 + Atu0611 0.52 -0.6 599,208 + Atu0611 0.52 +0.5 599,225 - Atu0611 0.54 +0.5 599,243 - Atu0611 0.56 +0.9 599,354 - Atu0611 0.68 +0.0 599,354 - Atu0611 0.68 -0.0 599,354 - Atu0611 0.68 +0.4 599,477 + Atu0611 0.81 +0.0 599,563 - -0.2 599,601 - -0.0 599,637 + +1.4 599,645 - +0.8 599,645 - +1.3 599,656 - -0.0 599,723 - +0.0
Or see this region's nucleotide sequence