Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0523 and Atu0524 are separated by 421 nucleotides Atu0524 and Atu0525 overlap by 1 nucleotides Atu0525 and Atu0526 are separated by 148 nucleotides
Atu0523: Atu0523 - flagellar M-ring protein, at 512,099 to 513,799
Atu0523
Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901
Atu0524
Atu0525: Atu0525 - transcriptional regulator, LuxR family, at 514,901 to 515,656
Atu0525
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Position (kb) 514
515 Strain fitness (log2 ratio) -1
0
1 at 513.230 kb on - strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.323 kb on + strand, within Atu0523 at 513.327 kb on + strand, within Atu0523 at 513.355 kb on - strand, within Atu0523 at 513.486 kb on + strand, within Atu0523 at 513.494 kb on - strand, within Atu0523 at 513.494 kb on - strand, within Atu0523 at 513.603 kb on - strand, within Atu0523 at 513.618 kb on - strand, within Atu0523 at 513.720 kb on + strand at 513.724 kb on + strand at 513.734 kb on + strand at 513.734 kb on + strand at 513.915 kb on + strand at 514.123 kb on - strand at 514.150 kb on + strand at 514.217 kb on + strand at 514.223 kb on + strand at 514.231 kb on - strand at 514.267 kb on - strand at 514.305 kb on - strand, within Atu0524 at 514.305 kb on - strand, within Atu0524 at 514.426 kb on + strand, within Atu0524 at 514.516 kb on + strand, within Atu0524 at 514.531 kb on + strand, within Atu0524 at 514.561 kb on + strand, within Atu0524 at 514.569 kb on - strand, within Atu0524 at 514.750 kb on - strand, within Atu0524 at 514.757 kb on + strand, within Atu0524 at 514.886 kb on + strand at 514.919 kb on - strand at 514.944 kb on - strand at 515.258 kb on + strand, within Atu0525 at 515.317 kb on + strand, within Atu0525 at 515.443 kb on + strand, within Atu0525 at 515.527 kb on + strand, within Atu0525 at 515.546 kb on - strand, within Atu0525 at 515.547 kb on + strand, within Atu0525 at 515.569 kb on - strand, within Atu0525 at 515.649 kb on - strand at 515.666 kb on + strand at 515.666 kb on + strand at 515.674 kb on - strand at 515.674 kb on - strand at 515.679 kb on + strand at 515.687 kb on - strand at 515.819 kb on + strand at 515.827 kb on - strand at 515.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 513,230 - Atu0523 0.66 +0.2 513,253 + Atu0523 0.68 +0.2 513,253 + Atu0523 0.68 +1.2 513,253 + Atu0523 0.68 -0.1 513,323 + Atu0523 0.72 -0.7 513,327 + Atu0523 0.72 +0.1 513,355 - Atu0523 0.74 +0.3 513,486 + Atu0523 0.82 +0.2 513,494 - Atu0523 0.82 +0.4 513,494 - Atu0523 0.82 +0.1 513,603 - Atu0523 0.88 +0.5 513,618 - Atu0523 0.89 +0.5 513,720 + +0.1 513,724 + +0.4 513,734 + -0.3 513,734 + +0.4 513,915 + -0.3 514,123 - -0.2 514,150 + +0.1 514,217 + -1.3 514,223 + -0.5 514,231 - -0.1 514,267 - -0.6 514,305 - Atu0524 0.12 -0.6 514,305 - Atu0524 0.12 +0.2 514,426 + Atu0524 0.30 -0.5 514,516 + Atu0524 0.43 -0.2 514,531 + Atu0524 0.46 -0.3 514,561 + Atu0524 0.50 +0.7 514,569 - Atu0524 0.51 -0.5 514,750 - Atu0524 0.78 -0.5 514,757 + Atu0524 0.79 +0.3 514,886 + -0.8 514,919 - +0.7 514,944 - +0.9 515,258 + Atu0525 0.47 -0.4 515,317 + Atu0525 0.55 -0.4 515,443 + Atu0525 0.72 -0.1 515,527 + Atu0525 0.83 +0.1 515,546 - Atu0525 0.85 -1.1 515,547 + Atu0525 0.85 -0.0 515,569 - Atu0525 0.88 -1.0 515,649 - -0.0 515,666 + +0.4 515,666 + -0.2 515,674 - -0.1 515,674 - -0.1 515,679 + +0.3 515,687 - +1.3 515,819 + +0.1 515,827 - -0.3 515,840 + +0.2
Or see this region's nucleotide sequence