Strain Fitness in Agrobacterium fabrum C58 around Atu0422

Experiment: pinene 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0421 and Atu0422 overlap by 4 nucleotidesAtu0422 and Atu0423 are separated by 14 nucleotidesAtu0423 and Atu0424 are separated by 96 nucleotides Atu0421: Atu0421 - ABC transporter, membrane spanning protein, at 417,601 to 419,085 Atu0421 Atu0422: Atu0422 - ABC transporter, membrane spanning protein, at 419,082 to 420,404 Atu0422 Atu0423: Atu0423 - ABC transporter, nucleotide binding/ATPase protein, at 420,419 to 421,234 Atu0423 Atu0424: Atu0424 - phosphate transport system regulatory protein, at 421,331 to 422,056 Atu0424 Position (kb) 419 420 421Strain fitness (log2 ratio) -2 -1 0 1at 418.260 kb on + strand, within Atu0421at 420.029 kb on + strand, within Atu0422at 420.170 kb on + strand, within Atu0422at 420.245 kb on + strand, within Atu0422at 420.400 kb on + strandat 421.287 kb on - strandat 421.317 kb on - strandat 421.329 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pinene 5 mM
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418,260 + Atu0421 0.44 -1.2
420,029 + Atu0422 0.72 -2.0
420,170 + Atu0422 0.82 -1.8
420,245 + Atu0422 0.88 -2.4
420,400 + +0.0
421,287 - +0.7
421,317 - -2.0
421,329 + +0.1

Or see this region's nucleotide sequence