Experiment: pinene 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0388 and Atu8009 are separated by 78 nucleotides Atu8009 and Atu0389 are separated by 37 nucleotides Atu0389 and Atu0390 are separated by 180 nucleotides Atu0390 and Atu0391 are separated by 331 nucleotides
Atu0388: Atu0388 - two component sensor kinase, at 381,014 to 382,489
Atu0388
Atu8009: Atu8009 - hypothetical protein, at 382,568 to 382,669
Atu8009
Atu0389: Atu0389 - tRNA-Arg, at 382,707 to 382,783
Atu0389
Atu0390: Atu0390 - ubiquinone/menaquinone biosynthesis methyltransferase, at 382,964 to 383,776
Atu0390
Atu0391: Atu0391 - ABC transporter, nucleotide binding/ATPase protein, at 384,108 to 385,139
Atu0391
Position (kb) 382
383
384 Strain fitness (log2 ratio) -1
0
1
2 at 381.965 kb on + strand, within Atu0388 at 381.965 kb on + strand, within Atu0388 at 382.003 kb on + strand, within Atu0388 at 382.023 kb on + strand, within Atu0388 at 382.031 kb on + strand, within Atu0388 at 382.226 kb on + strand, within Atu0388 at 382.347 kb on + strand at 382.366 kb on - strand at 382.469 kb on - strand at 382.474 kb on + strand at 382.482 kb on - strand at 382.526 kb on - strand at 382.526 kb on - strand at 382.526 kb on - strand at 382.527 kb on - strand at 382.885 kb on + strand at 382.893 kb on - strand at 382.921 kb on + strand at 382.929 kb on + strand at 382.936 kb on + strand at 382.947 kb on - strand at 383.016 kb on + strand at 383.027 kb on - strand at 383.177 kb on - strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.313 kb on - strand, within Atu0390 at 383.429 kb on + strand, within Atu0390 at 383.751 kb on - strand at 383.771 kb on + strand at 383.771 kb on + strand at 383.779 kb on - strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.869 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.931 kb on + strand at 383.939 kb on - strand at 384.125 kb on + strand at 384.134 kb on + strand at 384.177 kb on + strand at 384.459 kb on + strand, within Atu0391 at 384.464 kb on + strand, within Atu0391 at 384.472 kb on - strand, within Atu0391 at 384.492 kb on - strand, within Atu0391 at 384.504 kb on + strand, within Atu0391 at 384.512 kb on - strand, within Atu0391 at 384.551 kb on + strand, within Atu0391 at 384.586 kb on - strand, within Atu0391 at 384.606 kb on + strand, within Atu0391 at 384.614 kb on - strand, within Atu0391 at 384.616 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.630 kb on - strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.649 kb on + strand, within Atu0391 at 384.651 kb on + strand, within Atu0391 at 384.698 kb on - strand, within Atu0391 at 384.722 kb on + strand, within Atu0391 at 384.746 kb on + strand, within Atu0391
Per-strain Table
Position Strand Gene LocusTag Fraction pinene 5 mM remove 381,965 + Atu0388 0.64 -0.2 381,965 + Atu0388 0.64 -0.2 382,003 + Atu0388 0.67 -0.4 382,023 + Atu0388 0.68 -0.6 382,031 + Atu0388 0.69 -0.2 382,226 + Atu0388 0.82 -0.6 382,347 + +0.2 382,366 - -0.1 382,469 - +0.1 382,474 + +0.1 382,482 - +0.2 382,526 - +0.2 382,526 - -0.0 382,526 - -0.4 382,527 - -0.1 382,885 + -0.6 382,893 - +0.3 382,921 + +0.1 382,929 + +1.3 382,936 + +0.4 382,947 - -0.2 383,016 + -0.2 383,027 - +0.8 383,177 - Atu0390 0.26 +0.5 383,178 + Atu0390 0.26 +0.1 383,178 + Atu0390 0.26 +0.2 383,268 - Atu0390 0.37 +0.3 383,268 - Atu0390 0.37 +0.5 383,313 - Atu0390 0.43 -0.4 383,429 + Atu0390 0.57 +0.2 383,751 - -0.2 383,771 + -0.1 383,771 + -0.1 383,779 - -0.4 383,867 + -0.7 383,867 + -0.2 383,867 + -0.6 383,867 + -0.4 383,867 + +0.4 383,867 + -0.1 383,867 + +0.0 383,869 - +0.2 383,875 - -1.1 383,875 - -0.0 383,875 - +0.1 383,875 - -0.1 383,875 - +0.2 383,931 + +0.1 383,939 - -0.1 384,125 + -0.1 384,134 + +0.0 384,177 + -0.3 384,459 + Atu0391 0.34 -1.2 384,464 + Atu0391 0.34 -0.8 384,472 - Atu0391 0.35 +0.1 384,492 - Atu0391 0.37 -0.5 384,504 + Atu0391 0.38 +0.1 384,512 - Atu0391 0.39 -0.4 384,551 + Atu0391 0.43 +0.3 384,586 - Atu0391 0.46 -0.5 384,606 + Atu0391 0.48 +1.8 384,614 - Atu0391 0.49 +0.0 384,616 + Atu0391 0.49 +0.0 384,622 + Atu0391 0.50 -0.2 384,622 + Atu0391 0.50 +0.3 384,622 + Atu0391 0.50 -0.2 384,630 - Atu0391 0.51 +0.0 384,639 + Atu0391 0.51 -0.1 384,639 + Atu0391 0.51 -0.0 384,649 + Atu0391 0.52 +0.2 384,651 + Atu0391 0.53 -0.1 384,698 - Atu0391 0.57 +0.1 384,722 + Atu0391 0.59 +0.2 384,746 + Atu0391 0.62 +0.3
Or see this region's nucleotide sequence