Strain Fitness in Agrobacterium fabrum C58 around Atu0640

Experiment: D(+)-Carvone 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0639 and Atu0640 are separated by 97 nucleotidesAtu0640 and Atu0641 are separated by 193 nucleotidesAtu0641 and Atu0642 are separated by 74 nucleotides Atu0639: Atu0639 - glycyl-tRNA synthetase, alpha subunit, at 626,233 to 627,165 Atu0639 Atu0640: Atu0640 - hypothetical protein, at 627,263 to 627,580 Atu0640 Atu0641: Atu0641 - hypothetical protein, at 627,774 to 628,325 Atu0641 Atu0642: Atu0642 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 628,400 to 629,677 Atu0642 Position (kb) 627 628Strain fitness (log2 ratio) -1 0 1at 627.287 kb on + strandat 627.305 kb on + strand, within Atu0640at 627.326 kb on - strand, within Atu0640at 627.331 kb on - strand, within Atu0640at 627.576 kb on + strandat 627.623 kb on - strandat 627.675 kb on - strandat 627.681 kb on - strandat 627.712 kb on + strandat 627.720 kb on - strandat 627.854 kb on + strand, within Atu0641at 628.351 kb on + strandat 628.361 kb on + strandat 628.361 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D(+)-Carvone 5 mM
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627,287 + -0.2
627,305 + Atu0640 0.13 +0.1
627,326 - Atu0640 0.20 -0.1
627,331 - Atu0640 0.21 -1.1
627,576 + -0.2
627,623 - +0.2
627,675 - +0.3
627,681 - -0.3
627,712 + -0.2
627,720 - +0.4
627,854 + Atu0641 0.14 -0.2
628,351 + -0.0
628,361 + +0.4
628,361 + +0.1

Or see this region's nucleotide sequence