Experiment: Gallic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0263 and Atu0264 are separated by 108 nucleotides Atu0264 and Atu0265 overlap by 1 nucleotides Atu0265 and Atu0266 are separated by 180 nucleotides
Atu0263: Atu0263 - oxidoreductase, at 260,481 to 261,431
Atu0263
Atu0264: Atu0264 - transcriptional regulator, AraC family, at 261,540 to 262,523
Atu0264
Atu0265: Atu0265 - hydrolase, at 262,523 to 263,083
Atu0265
Atu0266: Atu0266 - oxidoreductase, at 263,264 to 264,247
Atu0266
Position (kb) 261
262
263 Strain fitness (log2 ratio) -2
-1
0
1 at 260.614 kb on + strand, within Atu0263 at 260.614 kb on + strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.649 kb on + strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.870 kb on + strand, within Atu0263 at 260.878 kb on - strand, within Atu0263 at 260.891 kb on - strand, within Atu0263 at 261.279 kb on - strand, within Atu0263 at 261.332 kb on - strand, within Atu0263 at 261.355 kb on + strand at 261.418 kb on - strand at 261.489 kb on + strand at 261.704 kb on - strand, within Atu0264 at 261.770 kb on + strand, within Atu0264 at 261.799 kb on + strand, within Atu0264 at 261.804 kb on + strand, within Atu0264 at 261.831 kb on + strand, within Atu0264 at 261.916 kb on + strand, within Atu0264 at 261.961 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.064 kb on + strand, within Atu0264 at 262.107 kb on + strand, within Atu0264 at 262.112 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.117 kb on + strand, within Atu0264 at 262.125 kb on - strand, within Atu0264 at 262.158 kb on - strand, within Atu0264 at 262.209 kb on + strand, within Atu0264 at 262.230 kb on - strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.340 kb on + strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.348 kb on - strand, within Atu0264 at 262.359 kb on + strand, within Atu0264 at 262.591 kb on + strand, within Atu0265 at 262.623 kb on + strand, within Atu0265 at 262.660 kb on - strand, within Atu0265 at 262.738 kb on + strand, within Atu0265 at 262.811 kb on + strand, within Atu0265 at 262.846 kb on + strand, within Atu0265 at 262.854 kb on - strand, within Atu0265 at 262.854 kb on - strand, within Atu0265 at 262.866 kb on + strand, within Atu0265 at 262.904 kb on + strand, within Atu0265 at 262.904 kb on + strand, within Atu0265 at 262.912 kb on - strand, within Atu0265 at 262.918 kb on - strand, within Atu0265 at 262.928 kb on + strand, within Atu0265 at 263.103 kb on + strand at 263.373 kb on + strand, within Atu0266 at 263.411 kb on + strand, within Atu0266 at 263.445 kb on + strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.453 kb on - strand, within Atu0266 at 263.469 kb on + strand, within Atu0266
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid 5 mM remove 260,614 + Atu0263 0.14 +0.3 260,614 + Atu0263 0.14 +0.4 260,622 - Atu0263 0.15 -0.6 260,622 - Atu0263 0.15 +0.2 260,644 + Atu0263 0.17 +0.1 260,644 + Atu0263 0.17 -0.1 260,649 + Atu0263 0.18 +0.2 260,657 - Atu0263 0.19 +0.4 260,657 - Atu0263 0.19 +0.2 260,870 + Atu0263 0.41 -0.2 260,878 - Atu0263 0.42 +0.3 260,891 - Atu0263 0.43 +0.0 261,279 - Atu0263 0.84 +0.2 261,332 - Atu0263 0.89 +0.2 261,355 + -0.3 261,418 - +0.5 261,489 + -2.0 261,704 - Atu0264 0.17 +0.1 261,770 + Atu0264 0.23 -0.2 261,799 + Atu0264 0.26 +0.4 261,804 + Atu0264 0.27 -0.1 261,831 + Atu0264 0.30 +0.2 261,916 + Atu0264 0.38 +0.1 261,961 + Atu0264 0.43 -0.1 262,064 + Atu0264 0.53 -0.1 262,064 + Atu0264 0.53 -0.1 262,107 + Atu0264 0.58 -0.2 262,112 + Atu0264 0.58 -0.2 262,117 + Atu0264 0.59 -0.0 262,117 + Atu0264 0.59 +0.6 262,125 - Atu0264 0.59 -0.1 262,158 - Atu0264 0.63 +0.9 262,209 + Atu0264 0.68 -0.6 262,230 - Atu0264 0.70 +0.0 262,340 + Atu0264 0.81 +0.1 262,340 + Atu0264 0.81 -0.0 262,340 + Atu0264 0.81 -0.1 262,340 + Atu0264 0.81 -0.2 262,348 - Atu0264 0.82 -0.2 262,348 - Atu0264 0.82 -0.3 262,359 + Atu0264 0.83 +0.2 262,591 + Atu0265 0.12 -0.1 262,623 + Atu0265 0.18 +0.3 262,660 - Atu0265 0.24 +0.0 262,738 + Atu0265 0.38 -0.4 262,811 + Atu0265 0.51 -0.3 262,846 + Atu0265 0.58 +0.4 262,854 - Atu0265 0.59 -0.1 262,854 - Atu0265 0.59 +0.0 262,866 + Atu0265 0.61 +0.3 262,904 + Atu0265 0.68 +0.1 262,904 + Atu0265 0.68 -0.0 262,912 - Atu0265 0.69 +0.3 262,918 - Atu0265 0.70 +1.4 262,928 + Atu0265 0.72 -0.1 263,103 + -1.3 263,373 + Atu0266 0.11 +0.0 263,411 + Atu0266 0.15 +0.1 263,445 + Atu0266 0.18 -0.1 263,453 - Atu0266 0.19 -1.8 263,453 - Atu0266 0.19 +0.6 263,453 - Atu0266 0.19 -0.3 263,469 + Atu0266 0.21 +0.4
Or see this region's nucleotide sequence