Experiment: Gallic Acid 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0564 and Atu0565 are separated by 5 nucleotides Atu0565 and Atu0566 are separated by 80 nucleotides Atu0566 and Atu0567 are separated by 14 nucleotides
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Atu0565: Atu0565 - hypothetical protein, at 550,470 to 550,907
Atu0565
Atu0566: Atu0566 - hypothetical protein, at 550,988 to 551,200
Atu0566
Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507
Atu0567
Position (kb) 550
551
552 Strain fitness (log2 ratio) -1
0
1 at 549.989 kb on - strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.059 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.076 kb on + strand, within Atu0564 at 550.092 kb on + strand, within Atu0564 at 550.104 kb on + strand, within Atu0564 at 550.182 kb on + strand, within Atu0564 at 550.203 kb on + strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.272 kb on - strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.347 kb on + strand, within Atu0564 at 550.400 kb on + strand at 550.402 kb on + strand at 550.468 kb on - strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.486 kb on + strand at 550.505 kb on + strand at 550.585 kb on - strand, within Atu0565 at 550.639 kb on - strand, within Atu0565 at 550.782 kb on - strand, within Atu0565 at 550.848 kb on + strand, within Atu0565 at 550.867 kb on - strand at 550.890 kb on - strand at 550.895 kb on - strand at 550.985 kb on + strand at 551.002 kb on + strand at 551.004 kb on - strand at 551.075 kb on - strand, within Atu0566 at 551.133 kb on - strand, within Atu0566 at 551.232 kb on - strand at 551.241 kb on + strand at 551.283 kb on - strand at 551.293 kb on + strand at 551.368 kb on + strand, within Atu0567 at 551.406 kb on - strand, within Atu0567 at 551.411 kb on + strand, within Atu0567 at 551.441 kb on - strand, within Atu0567 at 551.463 kb on - strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.484 kb on + strand, within Atu0567 at 551.492 kb on - strand, within Atu0567 at 551.497 kb on - strand, within Atu0567 at 551.515 kb on - strand, within Atu0567 at 551.564 kb on - strand, within Atu0567 at 551.568 kb on + strand, within Atu0567 at 551.622 kb on - strand, within Atu0567 at 551.632 kb on - strand, within Atu0567 at 551.642 kb on - strand, within Atu0567 at 551.739 kb on + strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.764 kb on - strand, within Atu0567 at 551.840 kb on + strand, within Atu0567 at 551.872 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.889 kb on + strand, within Atu0567 at 551.890 kb on - strand, within Atu0567 at 551.955 kb on + strand, within Atu0567 at 552.060 kb on - strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.093 kb on + strand, within Atu0567 at 552.189 kb on - strand, within Atu0567 at 552.189 kb on - strand, within Atu0567
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid 5 mM remove 549,989 - Atu0564 0.56 -0.4 550,034 + Atu0564 0.60 -0.1 550,034 + Atu0564 0.60 -0.0 550,059 + Atu0564 0.63 -0.0 550,075 + Atu0564 0.64 +0.3 550,075 + Atu0564 0.64 +0.5 550,076 + Atu0564 0.64 +0.2 550,092 + Atu0564 0.66 +0.5 550,104 + Atu0564 0.67 +0.9 550,182 + Atu0564 0.74 +0.0 550,203 + Atu0564 0.76 -0.3 550,221 - Atu0564 0.77 -0.0 550,221 - Atu0564 0.77 -0.2 550,272 - Atu0564 0.82 +0.0 550,347 + Atu0564 0.89 -0.4 550,347 + Atu0564 0.89 +0.1 550,400 + -0.3 550,402 + -0.8 550,468 - -0.5 550,486 + -0.2 550,486 + +0.2 550,486 + -0.2 550,505 + -0.1 550,585 - Atu0565 0.26 -0.3 550,639 - Atu0565 0.39 +0.4 550,782 - Atu0565 0.71 +0.2 550,848 + Atu0565 0.86 +0.1 550,867 - +0.4 550,890 - +0.4 550,895 - -0.4 550,985 + +1.1 551,002 + +0.1 551,004 - -0.1 551,075 - Atu0566 0.41 -0.8 551,133 - Atu0566 0.68 -0.1 551,232 - +0.7 551,241 + -0.2 551,283 - +0.3 551,293 + -0.5 551,368 + Atu0567 0.12 -0.4 551,406 - Atu0567 0.15 -0.2 551,411 + Atu0567 0.15 +1.1 551,441 - Atu0567 0.17 -0.3 551,463 - Atu0567 0.19 -0.1 551,484 + Atu0567 0.21 +0.1 551,484 + Atu0567 0.21 +0.2 551,492 - Atu0567 0.21 -0.3 551,497 - Atu0567 0.22 +0.4 551,515 - Atu0567 0.23 +1.5 551,564 - Atu0567 0.27 +0.0 551,568 + Atu0567 0.27 -0.1 551,622 - Atu0567 0.31 -0.0 551,632 - Atu0567 0.32 -0.0 551,642 - Atu0567 0.33 -0.3 551,739 + Atu0567 0.41 -0.5 551,764 - Atu0567 0.42 -0.1 551,764 - Atu0567 0.42 +0.2 551,764 - Atu0567 0.42 +0.0 551,840 + Atu0567 0.48 -0.2 551,872 + Atu0567 0.51 -0.6 551,889 + Atu0567 0.52 +1.1 551,889 + Atu0567 0.52 +1.3 551,890 - Atu0567 0.52 +0.5 551,955 + Atu0567 0.57 -0.3 552,060 - Atu0567 0.65 +0.3 552,093 + Atu0567 0.68 -0.0 552,093 + Atu0567 0.68 -0.6 552,189 - Atu0567 0.75 +0.5 552,189 - Atu0567 0.75 +0.2
Or see this region's nucleotide sequence