Strain Fitness in Agrobacterium fabrum C58 around Atu0872

Experiment: Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0871 and Atu0872 are separated by 169 nucleotidesAtu0872 and Atu0873 are separated by 226 nucleotides Atu0871: Atu0871 - branched-chain-amino-acid aminotransferase, at 867,117 to 867,998 Atu0871 Atu0872: Atu0872 - methyl-accepting chemotaxis protein, at 868,168 to 870,525 Atu0872 Atu0873: Atu0873 - transcriptional regulator, LysR family, at 870,752 to 871,639 Atu0873 Position (kb) 868 869 870 871Strain fitness (log2 ratio) -2 -1 0 1 2at 867.202 kb on - strandat 867.222 kb on - strand, within Atu0871at 867.234 kb on + strand, within Atu0871at 867.309 kb on + strand, within Atu0871at 867.317 kb on - strand, within Atu0871at 867.407 kb on + strand, within Atu0871at 867.432 kb on - strand, within Atu0871at 867.486 kb on - strand, within Atu0871at 867.488 kb on + strand, within Atu0871at 867.548 kb on + strand, within Atu0871at 867.595 kb on + strand, within Atu0871at 867.597 kb on + strand, within Atu0871at 867.657 kb on - strand, within Atu0871at 867.699 kb on + strand, within Atu0871at 867.701 kb on - strand, within Atu0871at 867.825 kb on + strand, within Atu0871at 868.172 kb on + strandat 868.217 kb on + strandat 868.217 kb on + strandat 868.217 kb on + strandat 868.217 kb on + strandat 868.217 kb on + strandat 868.531 kb on - strand, within Atu0872at 868.535 kb on + strand, within Atu0872at 868.543 kb on - strand, within Atu0872at 868.565 kb on + strand, within Atu0872at 868.595 kb on - strand, within Atu0872at 868.610 kb on - strand, within Atu0872at 868.633 kb on - strand, within Atu0872at 868.663 kb on + strand, within Atu0872at 868.699 kb on - strand, within Atu0872at 868.703 kb on - strand, within Atu0872at 868.714 kb on - strand, within Atu0872at 868.768 kb on + strand, within Atu0872at 868.768 kb on + strand, within Atu0872at 868.768 kb on + strand, within Atu0872at 868.824 kb on + strand, within Atu0872at 868.868 kb on - strand, within Atu0872at 868.892 kb on - strand, within Atu0872at 868.897 kb on - strand, within Atu0872at 868.922 kb on - strand, within Atu0872at 868.974 kb on + strand, within Atu0872at 868.994 kb on - strand, within Atu0872at 869.009 kb on + strand, within Atu0872at 869.067 kb on + strand, within Atu0872at 869.178 kb on + strand, within Atu0872at 869.319 kb on + strand, within Atu0872at 869.361 kb on - strand, within Atu0872at 869.439 kb on + strand, within Atu0872at 869.466 kb on + strand, within Atu0872at 869.528 kb on + strand, within Atu0872at 869.595 kb on + strand, within Atu0872at 869.612 kb on + strand, within Atu0872at 869.620 kb on - strand, within Atu0872at 869.695 kb on - strand, within Atu0872at 869.762 kb on + strand, within Atu0872at 869.776 kb on + strand, within Atu0872at 869.782 kb on + strand, within Atu0872at 869.816 kb on - strand, within Atu0872at 869.816 kb on - strand, within Atu0872at 869.841 kb on - strand, within Atu0872at 870.090 kb on + strand, within Atu0872at 870.175 kb on - strand, within Atu0872at 870.222 kb on + strand, within Atu0872at 870.233 kb on + strand, within Atu0872at 870.254 kb on - strand, within Atu0872at 870.338 kb on + strandat 870.348 kb on + strandat 870.348 kb on + strandat 870.356 kb on - strandat 870.391 kb on + strandat 870.422 kb on - strandat 870.440 kb on + strandat 870.519 kb on + strandat 870.527 kb on - strandat 870.527 kb on - strandat 870.527 kb on - strandat 870.587 kb on - strandat 870.603 kb on + strandat 870.603 kb on + strandat 870.603 kb on + strandat 870.658 kb on - strandat 870.666 kb on - strandat 870.666 kb on - strandat 870.666 kb on - strandat 870.722 kb on - strandat 870.749 kb on + strandat 870.766 kb on - strandat 870.785 kb on - strandat 870.804 kb on + strandat 870.812 kb on - strandat 870.822 kb on - strandat 870.937 kb on - strand, within Atu0873at 870.966 kb on + strand, within Atu0873at 870.968 kb on - strand, within Atu0873at 870.969 kb on - strand, within Atu0873at 870.971 kb on + strand, within Atu0873at 870.979 kb on - strand, within Atu0873at 871.008 kb on + strand, within Atu0873at 871.093 kb on + strand, within Atu0873at 871.098 kb on + strand, within Atu0873at 871.103 kb on + strand, within Atu0873at 871.106 kb on - strand, within Atu0873at 871.212 kb on + strand, within Atu0873at 871.368 kb on + strand, within Atu0873at 871.381 kb on + strand, within Atu0873at 871.519 kb on + strand, within Atu0873at 871.521 kb on + strand, within Atu0873

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1.25 mM
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867,202 - +0.1
867,222 - Atu0871 0.12 +0.5
867,234 + Atu0871 0.13 +0.9
867,309 + Atu0871 0.22 +0.2
867,317 - Atu0871 0.23 -1.4
867,407 + Atu0871 0.33 -0.0
867,432 - Atu0871 0.36 +0.0
867,486 - Atu0871 0.42 -0.4
867,488 + Atu0871 0.42 +0.5
867,548 + Atu0871 0.49 +0.1
867,595 + Atu0871 0.54 -0.4
867,597 + Atu0871 0.54 +0.5
867,657 - Atu0871 0.61 +0.3
867,699 + Atu0871 0.66 -0.2
867,701 - Atu0871 0.66 +1.1
867,825 + Atu0871 0.80 +0.8
868,172 + -0.1
868,217 + -0.1
868,217 + +0.4
868,217 + +0.4
868,217 + -0.3
868,217 + -0.0
868,531 - Atu0872 0.15 -0.6
868,535 + Atu0872 0.16 +0.4
868,543 - Atu0872 0.16 +0.2
868,565 + Atu0872 0.17 +0.5
868,595 - Atu0872 0.18 +0.4
868,610 - Atu0872 0.19 +1.6
868,633 - Atu0872 0.20 +0.7
868,663 + Atu0872 0.21 +0.1
868,699 - Atu0872 0.23 -0.1
868,703 - Atu0872 0.23 +0.8
868,714 - Atu0872 0.23 +0.5
868,768 + Atu0872 0.25 -0.2
868,768 + Atu0872 0.25 +0.2
868,768 + Atu0872 0.25 +2.4
868,824 + Atu0872 0.28 -0.1
868,868 - Atu0872 0.30 +0.9
868,892 - Atu0872 0.31 +0.9
868,897 - Atu0872 0.31 -0.1
868,922 - Atu0872 0.32 +0.4
868,974 + Atu0872 0.34 +0.7
868,994 - Atu0872 0.35 -1.1
869,009 + Atu0872 0.36 -0.0
869,067 + Atu0872 0.38 -0.1
869,178 + Atu0872 0.43 +1.0
869,319 + Atu0872 0.49 -0.1
869,361 - Atu0872 0.51 +0.0
869,439 + Atu0872 0.54 -0.2
869,466 + Atu0872 0.55 +0.4
869,528 + Atu0872 0.58 +1.2
869,595 + Atu0872 0.61 -0.3
869,612 + Atu0872 0.61 -0.0
869,620 - Atu0872 0.62 +0.5
869,695 - Atu0872 0.65 -0.1
869,762 + Atu0872 0.68 +0.5
869,776 + Atu0872 0.68 +0.4
869,782 + Atu0872 0.68 +0.1
869,816 - Atu0872 0.70 +0.8
869,816 - Atu0872 0.70 +0.2
869,841 - Atu0872 0.71 +0.5
870,090 + Atu0872 0.82 +0.7
870,175 - Atu0872 0.85 -0.4
870,222 + Atu0872 0.87 +0.6
870,233 + Atu0872 0.88 +0.2
870,254 - Atu0872 0.88 -0.3
870,338 + -0.3
870,348 + +0.1
870,348 + -0.1
870,356 - +0.7
870,391 + -0.3
870,422 - -0.1
870,440 + +0.9
870,519 + +0.2
870,527 - +0.0
870,527 - +0.6
870,527 - +0.4
870,587 - +0.8
870,603 + -0.2
870,603 + +0.3
870,603 + -0.1
870,658 - +0.2
870,666 - +0.0
870,666 - -1.1
870,666 - +0.4
870,722 - -0.1
870,749 + -0.4
870,766 - +0.4
870,785 - +0.0
870,804 + -0.5
870,812 - -0.2
870,822 - -0.1
870,937 - Atu0873 0.21 -0.0
870,966 + Atu0873 0.24 -0.6
870,968 - Atu0873 0.24 +0.8
870,969 - Atu0873 0.24 -1.8
870,971 + Atu0873 0.25 +0.3
870,979 - Atu0873 0.26 -0.4
871,008 + Atu0873 0.29 -0.3
871,093 + Atu0873 0.38 -0.7
871,098 + Atu0873 0.39 -1.6
871,103 + Atu0873 0.40 -0.5
871,106 - Atu0873 0.40 -0.1
871,212 + Atu0873 0.52 -0.1
871,368 + Atu0873 0.69 +0.2
871,381 + Atu0873 0.71 -2.6
871,519 + Atu0873 0.86 +1.0
871,521 + Atu0873 0.87 -0.5

Or see this region's nucleotide sequence