Strain Fitness in Agrobacterium fabrum C58 around Atu0785

Experiment: Vanillin 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0784 and Atu0785 overlap by 4 nucleotidesAtu0785 and Atu0786 are separated by 93 nucleotides Atu0784: Atu0784 - hypothetical protein, at 779,594 to 782,509 Atu0784 Atu0785: Atu0785 - ribosomal-protein (S5)-alanine N-acetyltransferase, at 782,506 to 783,105 Atu0785 Atu0786: Atu0786 - peptidase, family M16, at 783,199 to 784,497 Atu0786 Position (kb) 782 783 784Strain fitness (log2 ratio) -1 0 1at 782.518 kb on - strandat 782.757 kb on - strand, within Atu0785at 782.779 kb on - strand, within Atu0785at 782.794 kb on + strand, within Atu0785at 782.797 kb on - strand, within Atu0785at 782.802 kb on - strand, within Atu0785at 783.046 kb on - strandat 783.051 kb on + strandat 783.064 kb on - strandat 783.066 kb on + strandat 783.125 kb on - strandat 783.210 kb on + strandat 783.210 kb on + strandat 783.337 kb on + strand, within Atu0786at 783.682 kb on - strand, within Atu0786at 783.860 kb on - strand, within Atu0786

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1.25 mM
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782,518 - +0.1
782,757 - Atu0785 0.42 +0.0
782,779 - Atu0785 0.46 +0.3
782,794 + Atu0785 0.48 -1.2
782,797 - Atu0785 0.48 +0.7
782,802 - Atu0785 0.49 +1.0
783,046 - +0.1
783,051 + -1.2
783,064 - +0.2
783,066 + +0.3
783,125 - +0.3
783,210 + +0.2
783,210 + +0.1
783,337 + Atu0786 0.11 +0.9
783,682 - Atu0786 0.37 +0.2
783,860 - Atu0786 0.51 -0.4

Or see this region's nucleotide sequence