Strain Fitness in Agrobacterium fabrum C58 around Atu0698

Experiment: Vanillin 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0697 and Atu0698 overlap by 4 nucleotidesAtu0698 and Atu0699 are separated by 152 nucleotides Atu0697: Atu0697 - tetraacyldisaccharide 4'-kinase, at 695,709 to 696,755 Atu0697 Atu0698: Atu0698 - hypothetical protein, at 696,752 to 696,985 Atu0698 Atu0699: Atu0699 - DNA mismatch repair protein MutL, at 697,138 to 698,958 Atu0699 Position (kb) 696 697Strain fitness (log2 ratio) -1 0 1at 696.763 kb on - strandat 696.819 kb on + strand, within Atu0698at 696.827 kb on - strand, within Atu0698at 696.896 kb on - strand, within Atu0698at 696.896 kb on - strand, within Atu0698at 696.908 kb on + strand, within Atu0698at 697.022 kb on - strandat 697.062 kb on + strandat 697.099 kb on - strandat 697.104 kb on - strandat 697.104 kb on - strandat 697.134 kb on + strandat 697.220 kb on - strandat 697.311 kb on - strandat 697.425 kb on + strand, within Atu0699at 697.738 kb on + strand, within Atu0699at 697.785 kb on + strand, within Atu0699at 697.899 kb on + strand, within Atu0699at 697.907 kb on - strand, within Atu0699at 697.922 kb on - strand, within Atu0699at 697.970 kb on - strand, within Atu0699

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 1.25 mM
remove
696,763 - -1.1
696,819 + Atu0698 0.29 -0.1
696,827 - Atu0698 0.32 +0.3
696,896 - Atu0698 0.62 +0.4
696,896 - Atu0698 0.62 +0.6
696,908 + Atu0698 0.67 +0.0
697,022 - -0.3
697,062 + -0.6
697,099 - -0.2
697,104 - -0.2
697,104 - +0.2
697,134 + +0.4
697,220 - +0.0
697,311 - -0.5
697,425 + Atu0699 0.16 -0.6
697,738 + Atu0699 0.33 +0.3
697,785 + Atu0699 0.36 -0.4
697,899 + Atu0699 0.42 +0.8
697,907 - Atu0699 0.42 -0.4
697,922 - Atu0699 0.43 -0.0
697,970 - Atu0699 0.46 -0.3

Or see this region's nucleotide sequence