Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0634 and Atu0635 are separated by 44 nucleotides Atu0635 and Atu0636 are separated by 96 nucleotides Atu0636 and Atu0637 are separated by 175 nucleotides Atu0637 and Atu0638 are separated by 20 nucleotides
Atu0634: Atu0634 - octaprenyl-diphosphate synthase, at 622,765 to 623,781
Atu0634
Atu0635: Atu0635 - hypothetical protein, at 623,826 to 624,122
Atu0635
Atu0636: Atu0636 - hypothetical protein, at 624,219 to 624,929
Atu0636
Atu0637: Atu0637 - proteinase sohB, at 625,105 to 625,887
Atu0637
Atu0638: Atu0638 - hypothetical protein, at 625,908 to 626,102
Atu0638
Position (kb) 624
625 Strain fitness (log2 ratio) -1
0
1 at 623.966 kb on + strand, within Atu0635 at 623.980 kb on - strand, within Atu0635 at 623.995 kb on + strand, within Atu0635 at 624.024 kb on - strand, within Atu0635 at 624.116 kb on + strand at 624.178 kb on - strand at 624.197 kb on + strand at 624.197 kb on + strand at 624.205 kb on - strand at 624.224 kb on - strand at 624.231 kb on + strand at 624.333 kb on + strand, within Atu0636 at 624.340 kb on - strand, within Atu0636 at 624.532 kb on - strand, within Atu0636 at 624.534 kb on - strand, within Atu0636 at 624.580 kb on - strand, within Atu0636 at 624.608 kb on + strand, within Atu0636 at 624.608 kb on + strand, within Atu0636 at 624.673 kb on + strand, within Atu0636 at 624.734 kb on - strand, within Atu0636 at 624.787 kb on - strand, within Atu0636 at 624.787 kb on - strand, within Atu0636 at 624.849 kb on + strand, within Atu0636 at 624.857 kb on + strand, within Atu0636 at 624.877 kb on - strand at 624.901 kb on + strand at 624.901 kb on + strand at 624.901 kb on + strand at 624.901 kb on + strand at 624.901 kb on + strand at 624.901 kb on + strand at 624.909 kb on - strand at 624.909 kb on - strand at 624.909 kb on - strand at 624.909 kb on - strand at 624.909 kb on - strand at 624.972 kb on + strand at 625.010 kb on + strand at 625.079 kb on - strand at 625.089 kb on + strand at 625.130 kb on - strand at 625.156 kb on - strand at 625.178 kb on - strand at 625.302 kb on - strand, within Atu0637 at 625.302 kb on - strand, within Atu0637 at 625.447 kb on + strand, within Atu0637 at 625.453 kb on - strand, within Atu0637 at 625.458 kb on + strand, within Atu0637 at 625.466 kb on - strand, within Atu0637 at 625.538 kb on - strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.632 kb on + strand, within Atu0637 at 625.640 kb on - strand, within Atu0637 at 625.640 kb on - strand, within Atu0637 at 625.696 kb on + strand, within Atu0637 at 625.704 kb on - strand, within Atu0637 at 625.722 kb on + strand, within Atu0637 at 625.727 kb on + strand, within Atu0637 at 625.792 kb on - strand, within Atu0637 at 625.812 kb on + strand at 625.837 kb on - strand at 625.888 kb on - strand at 625.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 623,966 + Atu0635 0.47 +0.2 623,980 - Atu0635 0.52 -0.2 623,995 + Atu0635 0.57 -0.0 624,024 - Atu0635 0.67 -0.1 624,116 + +0.0 624,178 - +0.1 624,197 + +0.2 624,197 + +0.1 624,205 - +0.3 624,224 - -0.5 624,231 + +0.2 624,333 + Atu0636 0.16 +1.0 624,340 - Atu0636 0.17 +0.2 624,532 - Atu0636 0.44 -1.0 624,534 - Atu0636 0.44 +0.9 624,580 - Atu0636 0.51 -0.1 624,608 + Atu0636 0.55 +1.3 624,608 + Atu0636 0.55 -0.5 624,673 + Atu0636 0.64 +0.1 624,734 - Atu0636 0.72 +0.3 624,787 - Atu0636 0.80 +0.3 624,787 - Atu0636 0.80 +0.2 624,849 + Atu0636 0.89 +1.1 624,857 + Atu0636 0.90 +0.3 624,877 - +0.1 624,901 + -0.1 624,901 + +0.1 624,901 + +0.6 624,901 + -0.1 624,901 + +0.1 624,901 + +0.2 624,909 - +0.8 624,909 - -0.3 624,909 - +0.9 624,909 - +0.0 624,909 - +0.3 624,972 + +0.1 625,010 + -1.7 625,079 - -0.4 625,089 + +0.3 625,130 - +0.1 625,156 - +1.1 625,178 - +0.1 625,302 - Atu0637 0.25 -0.0 625,302 - Atu0637 0.25 +0.1 625,447 + Atu0637 0.44 -0.5 625,453 - Atu0637 0.44 +0.6 625,458 + Atu0637 0.45 -0.9 625,466 - Atu0637 0.46 -0.2 625,538 - Atu0637 0.55 -0.1 625,632 + Atu0637 0.67 +0.3 625,632 + Atu0637 0.67 +0.1 625,632 + Atu0637 0.67 -0.2 625,632 + Atu0637 0.67 -0.1 625,640 - Atu0637 0.68 +0.1 625,640 - Atu0637 0.68 +0.2 625,696 + Atu0637 0.75 +0.4 625,704 - Atu0637 0.77 +0.2 625,722 + Atu0637 0.79 -0.6 625,727 + Atu0637 0.79 -0.2 625,792 - Atu0637 0.88 -0.9 625,812 + +0.5 625,837 - -0.7 625,888 - +0.9 625,924 - -0.3
Or see this region's nucleotide sequence