Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0334 and Atu0335 are separated by 13 nucleotides Atu0335 and Atu0337 are separated by 191 nucleotides Atu0337 and Atu0338 are separated by 26 nucleotides Atu0338 and Atu0339 are separated by 51 nucleotides
Atu0334: Atu0334 - hypothetical protein, at 327,688 to 328,251
Atu0334
Atu0335: Atu0335 - hypothetical protein, at 328,265 to 328,972
Atu0335
Atu0337: Atu0337 - proteinase IV, at 329,164 to 330,117
Atu0337
Atu0338: Atu0338 - integration host factor, beta subunit, at 330,144 to 330,446
Atu0338
Atu0339: Atu0339 - hypothetical protein, at 330,498 to 330,854
Atu0339
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 328.313 kb on - strand at 329.050 kb on + strand at 329.050 kb on + strand at 329.112 kb on + strand at 329.295 kb on - strand, within Atu0337 at 329.401 kb on + strand, within Atu0337 at 329.457 kb on + strand, within Atu0337 at 329.530 kb on + strand, within Atu0337 at 329.530 kb on + strand, within Atu0337 at 329.530 kb on + strand, within Atu0337 at 329.538 kb on - strand, within Atu0337 at 329.577 kb on - strand, within Atu0337 at 329.612 kb on + strand, within Atu0337 at 329.681 kb on + strand, within Atu0337 at 329.688 kb on + strand, within Atu0337 at 329.718 kb on + strand, within Atu0337 at 329.718 kb on + strand, within Atu0337 at 329.725 kb on + strand, within Atu0337 at 329.772 kb on + strand, within Atu0337 at 329.925 kb on + strand, within Atu0337 at 329.985 kb on + strand, within Atu0337 at 330.052 kb on - strand at 330.428 kb on - strand at 330.475 kb on - strand at 330.635 kb on - strand, within Atu0339 at 330.649 kb on - strand, within Atu0339 at 330.701 kb on - strand, within Atu0339 at 330.728 kb on + strand, within Atu0339 at 330.736 kb on - strand, within Atu0339 at 330.839 kb on + strand at 330.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 328,313 - -1.1 329,050 + -0.4 329,050 + +2.3 329,112 + -0.5 329,295 - Atu0337 0.14 +0.9 329,401 + Atu0337 0.25 +0.0 329,457 + Atu0337 0.31 +0.2 329,530 + Atu0337 0.38 -0.1 329,530 + Atu0337 0.38 +0.7 329,530 + Atu0337 0.38 +0.2 329,538 - Atu0337 0.39 +0.1 329,577 - Atu0337 0.43 -0.1 329,612 + Atu0337 0.47 +0.4 329,681 + Atu0337 0.54 +1.0 329,688 + Atu0337 0.55 +0.3 329,718 + Atu0337 0.58 +0.4 329,718 + Atu0337 0.58 -0.2 329,725 + Atu0337 0.59 +0.4 329,772 + Atu0337 0.64 +0.0 329,925 + Atu0337 0.80 +0.6 329,985 + Atu0337 0.86 +0.3 330,052 - +0.0 330,428 - -0.3 330,475 - -0.1 330,635 - Atu0339 0.38 +0.4 330,649 - Atu0339 0.42 +0.0 330,701 - Atu0339 0.57 +0.1 330,728 + Atu0339 0.64 -0.3 330,736 - Atu0339 0.67 -0.4 330,839 + -2.9 330,884 - -0.3
Or see this region's nucleotide sequence