Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3090 and Atu3091 are separated by 191 nucleotides Atu3091 and Atu3092 are separated by 36 nucleotides Atu3092 and Atu3093 are separated by 96 nucleotides
Atu3090: Atu3090 - DNA polymerase III subunit epsilon, at 96,196 to 97,176
Atu3090
Atu3091: Atu3091 - hypothetical protein, at 97,368 to 98,270
Atu3091
Atu3092: Atu3092 - hypothetical protein, at 98,307 to 98,792
Atu3092
Atu3093: Atu3093 - transglycosylase, at 98,889 to 99,782
Atu3093
Position (kb) 97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 96.429 kb on + strand, within Atu3090 at 96.443 kb on + strand, within Atu3090 at 96.443 kb on + strand, within Atu3090 at 96.497 kb on + strand, within Atu3090 at 96.544 kb on + strand, within Atu3090 at 96.585 kb on + strand, within Atu3090 at 96.615 kb on - strand, within Atu3090 at 96.629 kb on + strand, within Atu3090 at 96.637 kb on - strand, within Atu3090 at 96.703 kb on + strand, within Atu3090 at 96.777 kb on - strand, within Atu3090 at 96.836 kb on + strand, within Atu3090 at 96.880 kb on + strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.013 kb on - strand, within Atu3090 at 97.089 kb on - strand at 97.100 kb on - strand at 97.289 kb on + strand at 97.296 kb on + strand at 97.297 kb on - strand at 97.297 kb on - strand at 97.299 kb on - strand at 97.560 kb on - strand, within Atu3091 at 97.570 kb on - strand, within Atu3091 at 97.570 kb on - strand, within Atu3091 at 97.625 kb on + strand, within Atu3091 at 97.733 kb on + strand, within Atu3091 at 97.733 kb on + strand, within Atu3091 at 97.796 kb on - strand, within Atu3091 at 97.801 kb on - strand, within Atu3091 at 97.803 kb on + strand, within Atu3091 at 97.858 kb on + strand, within Atu3091 at 97.925 kb on - strand, within Atu3091 at 97.964 kb on + strand, within Atu3091 at 97.970 kb on - strand, within Atu3091 at 97.972 kb on - strand, within Atu3091 at 98.205 kb on - strand at 98.330 kb on + strand at 98.338 kb on - strand at 98.353 kb on + strand at 98.484 kb on - strand, within Atu3092 at 98.509 kb on - strand, within Atu3092 at 98.514 kb on - strand, within Atu3092 at 98.519 kb on - strand, within Atu3092 at 98.519 kb on - strand, within Atu3092 at 98.622 kb on + strand, within Atu3092 at 98.659 kb on - strand, within Atu3092 at 98.664 kb on - strand, within Atu3092 at 98.733 kb on + strand, within Atu3092 at 98.886 kb on + strand at 98.916 kb on - strand at 98.916 kb on - strand at 98.918 kb on - strand at 99.079 kb on - strand, within Atu3093 at 99.111 kb on + strand, within Atu3093 at 99.226 kb on + strand, within Atu3093
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 96,429 + Atu3090 0.24 +0.3 96,443 + Atu3090 0.25 +0.9 96,443 + Atu3090 0.25 +0.2 96,497 + Atu3090 0.31 +0.6 96,544 + Atu3090 0.35 -0.4 96,585 + Atu3090 0.40 -0.2 96,615 - Atu3090 0.43 -0.5 96,629 + Atu3090 0.44 +1.4 96,637 - Atu3090 0.45 -0.5 96,703 + Atu3090 0.52 -0.1 96,777 - Atu3090 0.59 -0.1 96,836 + Atu3090 0.65 +0.3 96,880 + Atu3090 0.70 -0.1 97,013 - Atu3090 0.83 +0.9 97,013 - Atu3090 0.83 -1.1 97,013 - Atu3090 0.83 +0.9 97,089 - +0.2 97,100 - +1.2 97,289 + -0.0 97,296 + +0.8 97,297 - -0.4 97,297 - +0.3 97,299 - -0.5 97,560 - Atu3091 0.21 +1.4 97,570 - Atu3091 0.22 -0.0 97,570 - Atu3091 0.22 -0.0 97,625 + Atu3091 0.28 -0.0 97,733 + Atu3091 0.40 -2.8 97,733 + Atu3091 0.40 +0.5 97,796 - Atu3091 0.47 +0.9 97,801 - Atu3091 0.48 +0.0 97,803 + Atu3091 0.48 -0.4 97,858 + Atu3091 0.54 +0.4 97,925 - Atu3091 0.62 +1.0 97,964 + Atu3091 0.66 -0.8 97,970 - Atu3091 0.67 +0.2 97,972 - Atu3091 0.67 +0.4 98,205 - -0.1 98,330 + +0.2 98,338 - +0.2 98,353 + -0.7 98,484 - Atu3092 0.36 +0.1 98,509 - Atu3092 0.42 -0.0 98,514 - Atu3092 0.43 +0.1 98,519 - Atu3092 0.44 +0.1 98,519 - Atu3092 0.44 +0.2 98,622 + Atu3092 0.65 +0.0 98,659 - Atu3092 0.72 +0.4 98,664 - Atu3092 0.73 +0.0 98,733 + Atu3092 0.88 +0.5 98,886 + -0.2 98,916 - +0.1 98,916 - +0.2 98,918 - -0.6 99,079 - Atu3093 0.21 +0.3 99,111 + Atu3093 0.25 +0.1 99,226 + Atu3093 0.38 -0.6
Or see this region's nucleotide sequence