Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3042 and Atu3043 overlap by 4 nucleotides Atu3043 and Atu3044 are separated by 44 nucleotides
Atu3042: Atu3042 - hypothetical protein, at 38,070 to 39,146
Atu3042
Atu3043: Atu3043 - hydantoinase beta subunit-like protein, at 39,143 to 40,681
Atu3043
Atu3044: Atu3044 - asparaginase, at 40,726 to 41,670
Atu3044
Position (kb) 39
40
41 Strain fitness (log2 ratio) -1
0
1
2 at 38.215 kb on - strand, within Atu3042 at 38.223 kb on - strand, within Atu3042 at 38.289 kb on + strand, within Atu3042 at 38.330 kb on - strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.397 kb on + strand, within Atu3042 at 38.475 kb on + strand, within Atu3042 at 38.681 kb on + strand, within Atu3042 at 38.792 kb on + strand, within Atu3042 at 38.833 kb on + strand, within Atu3042 at 39.027 kb on - strand, within Atu3042 at 39.037 kb on - strand, within Atu3042 at 39.039 kb on + strand at 39.081 kb on - strand at 39.156 kb on + strand at 39.164 kb on - strand at 39.245 kb on + strand at 39.258 kb on - strand at 39.263 kb on - strand at 39.330 kb on + strand, within Atu3043 at 39.338 kb on - strand, within Atu3043 at 39.361 kb on - strand, within Atu3043 at 39.391 kb on + strand, within Atu3043 at 39.393 kb on + strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.454 kb on - strand, within Atu3043 at 39.467 kb on + strand, within Atu3043 at 39.624 kb on + strand, within Atu3043 at 39.673 kb on + strand, within Atu3043 at 39.681 kb on - strand, within Atu3043 at 39.692 kb on - strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.705 kb on + strand, within Atu3043 at 39.733 kb on + strand, within Atu3043 at 39.741 kb on - strand, within Atu3043 at 39.751 kb on - strand, within Atu3043 at 39.753 kb on + strand, within Atu3043 at 39.822 kb on + strand, within Atu3043 at 39.878 kb on + strand, within Atu3043 at 39.899 kb on - strand, within Atu3043 at 39.923 kb on + strand, within Atu3043 at 40.068 kb on + strand, within Atu3043 at 40.253 kb on - strand, within Atu3043 at 40.283 kb on + strand, within Atu3043 at 40.283 kb on + strand, within Atu3043 at 40.302 kb on - strand, within Atu3043 at 40.308 kb on - strand, within Atu3043 at 40.332 kb on - strand, within Atu3043 at 40.332 kb on - strand, within Atu3043 at 40.402 kb on - strand, within Atu3043 at 40.440 kb on + strand, within Atu3043 at 40.461 kb on + strand, within Atu3043 at 40.507 kb on - strand, within Atu3043 at 40.525 kb on - strand, within Atu3043 at 40.568 kb on - strand at 40.743 kb on + strand at 40.841 kb on + strand, within Atu3044 at 40.920 kb on + strand, within Atu3044 at 41.238 kb on + strand, within Atu3044 at 41.531 kb on + strand, within Atu3044 at 41.539 kb on - strand, within Atu3044 at 41.554 kb on - strand, within Atu3044 at 41.572 kb on + strand, within Atu3044 at 41.577 kb on + strand at 41.577 kb on + strand at 41.583 kb on - strand at 41.590 kb on + strand at 41.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 38,215 - Atu3042 0.13 -0.6 38,223 - Atu3042 0.14 +0.4 38,289 + Atu3042 0.20 +0.6 38,330 - Atu3042 0.24 +0.6 38,397 + Atu3042 0.30 +0.7 38,397 + Atu3042 0.30 +0.3 38,475 + Atu3042 0.38 -0.2 38,681 + Atu3042 0.57 -0.1 38,792 + Atu3042 0.67 +0.2 38,833 + Atu3042 0.71 -1.2 39,027 - Atu3042 0.89 -0.4 39,037 - Atu3042 0.90 +0.2 39,039 + -0.6 39,081 - +0.1 39,156 + +0.2 39,164 - +0.2 39,245 + +0.3 39,258 - +0.4 39,263 - +0.1 39,330 + Atu3043 0.12 +0.0 39,338 - Atu3043 0.13 +1.2 39,361 - Atu3043 0.14 +0.2 39,391 + Atu3043 0.16 +0.3 39,393 + Atu3043 0.16 -0.7 39,454 - Atu3043 0.20 +0.9 39,454 - Atu3043 0.20 +0.1 39,467 + Atu3043 0.21 +0.1 39,624 + Atu3043 0.31 -0.7 39,673 + Atu3043 0.34 -0.8 39,681 - Atu3043 0.35 +0.3 39,692 - Atu3043 0.36 +0.2 39,705 + Atu3043 0.37 +1.2 39,705 + Atu3043 0.37 +0.0 39,733 + Atu3043 0.38 +0.9 39,741 - Atu3043 0.39 +0.6 39,751 - Atu3043 0.40 -0.0 39,753 + Atu3043 0.40 +0.0 39,822 + Atu3043 0.44 +1.4 39,878 + Atu3043 0.48 +0.4 39,899 - Atu3043 0.49 +0.3 39,923 + Atu3043 0.51 +0.0 40,068 + Atu3043 0.60 +0.1 40,253 - Atu3043 0.72 -0.5 40,283 + Atu3043 0.74 +0.3 40,283 + Atu3043 0.74 +0.0 40,302 - Atu3043 0.75 +0.3 40,308 - Atu3043 0.76 +0.2 40,332 - Atu3043 0.77 +2.0 40,332 - Atu3043 0.77 +0.1 40,402 - Atu3043 0.82 +0.1 40,440 + Atu3043 0.84 +0.5 40,461 + Atu3043 0.86 +0.0 40,507 - Atu3043 0.89 -0.0 40,525 - Atu3043 0.90 -0.4 40,568 - -0.3 40,743 + +0.3 40,841 + Atu3044 0.12 +0.0 40,920 + Atu3044 0.21 +0.4 41,238 + Atu3044 0.54 +1.0 41,531 + Atu3044 0.85 +0.1 41,539 - Atu3044 0.86 +0.9 41,554 - Atu3044 0.88 +0.3 41,572 + Atu3044 0.90 -0.1 41,577 + -1.1 41,577 + +0.3 41,583 - +0.3 41,590 + +0.1 41,643 + -0.2
Or see this region's nucleotide sequence