Experiment: Vanillin 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0236 and Atu0237 are separated by 71 nucleotides Atu0237 and Atu0238 are separated by 154 nucleotides Atu0238 and Atu0239 overlap by 4 nucleotides Atu0239 and Atu0240 overlap by 26 nucleotides
Atu0236: Atu0236 - hypothetical protein, at 236,801 to 237,118
Atu0236
Atu0237: Atu0237 - hypothetical protein, at 237,190 to 237,648
Atu0237
Atu0238: Atu0238 - oxidoreductase, at 237,803 to 238,696
Atu0238
Atu0239: Atu0239 - transcriptional regulator, AraC family, at 238,693 to 239,589
Atu0239
Atu0240: Atu0240 - hypothetical protein, at 239,564 to 239,971
Atu0240
Position (kb) 237
238
239 Strain fitness (log2 ratio) -1
0
1 at 237.035 kb on + strand, within Atu0236 at 237.095 kb on + strand at 237.106 kb on + strand at 237.112 kb on + strand at 237.114 kb on - strand at 237.114 kb on - strand at 237.196 kb on - strand at 237.225 kb on + strand at 237.383 kb on + strand, within Atu0237 at 237.388 kb on + strand, within Atu0237 at 237.419 kb on + strand, within Atu0237 at 237.419 kb on + strand, within Atu0237 at 237.477 kb on - strand, within Atu0237 at 237.499 kb on - strand, within Atu0237 at 238.018 kb on + strand, within Atu0238 at 238.029 kb on + strand, within Atu0238 at 238.033 kb on - strand, within Atu0238 at 238.056 kb on + strand, within Atu0238 at 238.059 kb on - strand, within Atu0238 at 238.110 kb on + strand, within Atu0238 at 238.126 kb on + strand, within Atu0238 at 238.134 kb on + strand, within Atu0238 at 238.184 kb on + strand, within Atu0238 at 238.315 kb on + strand, within Atu0238 at 238.437 kb on + strand, within Atu0238 at 238.514 kb on + strand, within Atu0238 at 238.631 kb on - strand at 238.695 kb on + strand at 238.708 kb on + strand at 238.880 kb on - strand, within Atu0239 at 238.935 kb on + strand, within Atu0239 at 238.943 kb on - strand, within Atu0239 at 238.993 kb on + strand, within Atu0239 at 239.001 kb on - strand, within Atu0239 at 239.051 kb on + strand, within Atu0239 at 239.099 kb on - strand, within Atu0239 at 239.194 kb on + strand, within Atu0239 at 239.223 kb on + strand, within Atu0239 at 239.231 kb on - strand, within Atu0239 at 239.235 kb on - strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.461 kb on + strand, within Atu0239 at 239.464 kb on - strand, within Atu0239 at 239.509 kb on + strand at 239.512 kb on - strand at 239.660 kb on - strand, within Atu0240
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 1.25 mM remove 237,035 + Atu0236 0.74 -0.2 237,095 + -0.5 237,106 + -0.2 237,112 + +0.1 237,114 - -0.0 237,114 - +0.2 237,196 - -0.1 237,225 + +0.0 237,383 + Atu0237 0.42 -0.3 237,388 + Atu0237 0.43 +0.6 237,419 + Atu0237 0.50 +0.0 237,419 + Atu0237 0.50 -0.2 237,477 - Atu0237 0.63 -0.1 237,499 - Atu0237 0.67 -0.2 238,018 + Atu0238 0.24 +0.2 238,029 + Atu0238 0.25 +1.4 238,033 - Atu0238 0.26 +0.1 238,056 + Atu0238 0.28 +0.3 238,059 - Atu0238 0.29 +1.1 238,110 + Atu0238 0.34 -0.2 238,126 + Atu0238 0.36 +0.3 238,134 + Atu0238 0.37 +0.5 238,184 + Atu0238 0.43 +0.1 238,315 + Atu0238 0.57 +0.0 238,437 + Atu0238 0.71 +0.8 238,514 + Atu0238 0.80 +0.1 238,631 - -0.4 238,695 + -0.2 238,708 + +0.6 238,880 - Atu0239 0.21 -1.0 238,935 + Atu0239 0.27 +0.1 238,943 - Atu0239 0.28 +0.2 238,993 + Atu0239 0.33 -0.0 239,001 - Atu0239 0.34 -0.4 239,051 + Atu0239 0.40 +0.1 239,099 - Atu0239 0.45 +0.2 239,194 + Atu0239 0.56 -0.0 239,223 + Atu0239 0.59 +0.3 239,231 - Atu0239 0.60 -0.3 239,235 - Atu0239 0.60 -0.5 239,461 + Atu0239 0.86 -0.5 239,461 + Atu0239 0.86 -0.4 239,464 - Atu0239 0.86 +0.2 239,509 + -0.1 239,512 - -1.2 239,660 - Atu0240 0.24 -0.0
Or see this region's nucleotide sequence