Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3570 and Atu3571 overlap by 1 nucleotides Atu3571 and Atu8113 overlap by 4 nucleotides Atu8113 and Atu3572 are separated by 126 nucleotides Atu3572 and Atu3573 are separated by 28 nucleotides
Atu3570: Atu3570 - hypothetical protein, at 623,482 to 624,678
Atu3570
Atu3571: Atu3571 - hypothetical protein, at 624,678 to 625,391
Atu3571
Atu8113: Atu8113 - hypothetical protein, at 625,388 to 626,539
Atu8113
Atu3572: Atu3572 - transcriptional regulator, at 626,666 to 627,103
Atu3572
Atu3573: Atu3573 - hypothetical protein, at 627,132 to 627,431
Atu3573
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1 at 624.481 kb on - strand, within Atu3570 at 624.518 kb on - strand, within Atu3570 at 624.563 kb on + strand at 624.571 kb on - strand at 624.723 kb on - strand at 624.833 kb on - strand, within Atu3571 at 624.864 kb on - strand, within Atu3571 at 624.899 kb on - strand, within Atu3571 at 624.932 kb on + strand, within Atu3571 at 624.933 kb on + strand, within Atu3571 at 624.968 kb on - strand, within Atu3571 at 625.027 kb on - strand, within Atu3571 at 625.130 kb on + strand, within Atu3571 at 625.205 kb on - strand, within Atu3571 at 625.213 kb on + strand, within Atu3571 at 625.280 kb on + strand, within Atu3571 at 625.326 kb on + strand at 625.326 kb on - strand at 625.393 kb on - strand at 625.393 kb on - strand at 625.438 kb on - strand at 625.485 kb on + strand at 625.495 kb on - strand at 625.665 kb on - strand, within Atu8113 at 625.767 kb on + strand, within Atu8113 at 625.775 kb on - strand, within Atu8113 at 625.835 kb on - strand, within Atu8113 at 625.869 kb on + strand, within Atu8113 at 625.878 kb on - strand, within Atu8113 at 625.880 kb on + strand, within Atu8113 at 625.968 kb on + strand, within Atu8113 at 626.052 kb on + strand, within Atu8113 at 626.062 kb on + strand, within Atu8113 at 626.117 kb on + strand, within Atu8113 at 626.361 kb on - strand, within Atu8113 at 626.385 kb on + strand, within Atu8113 at 626.393 kb on - strand, within Atu8113 at 626.426 kb on + strand at 626.434 kb on - strand at 626.434 kb on - strand at 626.461 kb on - strand at 626.486 kb on + strand at 626.496 kb on + strand at 626.562 kb on + strand at 626.694 kb on + strand at 626.713 kb on + strand, within Atu3572 at 626.739 kb on + strand, within Atu3572 at 626.747 kb on - strand, within Atu3572 at 626.778 kb on + strand, within Atu3572 at 626.786 kb on - strand, within Atu3572 at 626.789 kb on + strand, within Atu3572 at 626.834 kb on + strand, within Atu3572 at 626.846 kb on + strand, within Atu3572 at 626.854 kb on - strand, within Atu3572 at 626.896 kb on + strand, within Atu3572 at 626.937 kb on - strand, within Atu3572 at 626.995 kb on + strand, within Atu3572 at 627.103 kb on + strand at 627.108 kb on + strand at 627.108 kb on + strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.116 kb on - strand at 627.149 kb on - strand at 627.303 kb on - strand, within Atu3573 at 627.333 kb on + strand, within Atu3573 at 627.338 kb on + strand, within Atu3573 at 627.378 kb on - strand, within Atu3573 at 627.380 kb on + strand, within Atu3573 at 627.388 kb on - strand, within Atu3573 at 627.398 kb on - strand, within Atu3573 at 627.416 kb on + strand at 627.416 kb on + strand at 627.471 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 624,481 - Atu3570 0.83 +1.3 624,518 - Atu3570 0.87 +0.2 624,563 + -0.1 624,571 - -2.0 624,723 - +0.5 624,833 - Atu3571 0.22 +0.4 624,864 - Atu3571 0.26 +0.2 624,899 - Atu3571 0.31 +0.3 624,932 + Atu3571 0.36 -0.3 624,933 + Atu3571 0.36 -0.2 624,968 - Atu3571 0.41 +0.1 625,027 - Atu3571 0.49 +0.3 625,130 + Atu3571 0.63 +0.7 625,205 - Atu3571 0.74 -0.2 625,213 + Atu3571 0.75 +0.1 625,280 + Atu3571 0.84 -0.7 625,326 + +0.5 625,326 - +0.4 625,393 - -0.6 625,393 - +0.7 625,438 - +0.2 625,485 + -0.2 625,495 - +0.2 625,665 - Atu8113 0.24 +0.0 625,767 + Atu8113 0.33 +0.4 625,775 - Atu8113 0.34 -0.2 625,835 - Atu8113 0.39 +0.5 625,869 + Atu8113 0.42 +0.4 625,878 - Atu8113 0.43 +0.2 625,880 + Atu8113 0.43 +0.4 625,968 + Atu8113 0.50 +0.4 626,052 + Atu8113 0.58 -0.2 626,062 + Atu8113 0.59 +0.8 626,117 + Atu8113 0.63 -0.5 626,361 - Atu8113 0.84 +0.2 626,385 + Atu8113 0.87 +0.3 626,393 - Atu8113 0.87 +0.4 626,426 + -1.0 626,434 - +0.8 626,434 - +0.2 626,461 - -0.5 626,486 + -0.2 626,496 + -0.2 626,562 + +1.3 626,694 + -1.7 626,713 + Atu3572 0.11 -0.5 626,739 + Atu3572 0.17 -0.1 626,747 - Atu3572 0.18 -0.3 626,778 + Atu3572 0.26 -0.3 626,786 - Atu3572 0.27 -0.8 626,789 + Atu3572 0.28 -0.0 626,834 + Atu3572 0.38 -0.3 626,846 + Atu3572 0.41 -0.0 626,854 - Atu3572 0.43 -0.3 626,896 + Atu3572 0.53 -0.3 626,937 - Atu3572 0.62 -0.3 626,995 + Atu3572 0.75 -0.1 627,103 + +0.7 627,108 + -0.9 627,108 + -0.7 627,116 - +0.1 627,116 - -0.3 627,116 - +0.3 627,149 - +0.4 627,303 - Atu3573 0.57 -0.2 627,333 + Atu3573 0.67 -0.1 627,338 + Atu3573 0.69 +1.3 627,378 - Atu3573 0.82 +0.0 627,380 + Atu3573 0.83 +0.0 627,388 - Atu3573 0.85 +0.5 627,398 - Atu3573 0.89 +0.4 627,416 + +0.5 627,416 + -0.6 627,471 + -0.9
Or see this region's nucleotide sequence