Strain Fitness in Agrobacterium fabrum C58 around Atu6030

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6029 and Atu6030 are separated by 3 nucleotidesAtu6030 and Atu6031 overlap by 4 nucleotides Atu6029: Atu6029 - transcriptional regulator, LysR family for nopaline metabolism, at 40,362 to 41,210 Atu6029 Atu6030: Atu6030 - ORF13 hypothetical protein, at 41,214 to 41,573 Atu6030 Atu6031: Atu6031 - conjugal transfer protein, at 41,570 to 42,886 Atu6031 Position (kb) 41 42Strain fitness (log2 ratio) -2 -1 0 1at 40.334 kb on + strandat 40.334 kb on + strandat 40.334 kb on + strandat 40.359 kb on + strandat 40.395 kb on - strandat 40.395 kb on - strandat 40.397 kb on + strandat 40.415 kb on + strandat 40.490 kb on + strand, within Atu6029at 40.510 kb on - strand, within Atu6029at 40.598 kb on + strand, within Atu6029at 40.598 kb on + strand, within Atu6029at 40.598 kb on + strand, within Atu6029at 40.600 kb on + strand, within Atu6029at 40.622 kb on - strand, within Atu6029at 40.682 kb on + strand, within Atu6029at 40.728 kb on - strand, within Atu6029at 40.760 kb on + strand, within Atu6029at 40.760 kb on + strand, within Atu6029at 40.765 kb on + strand, within Atu6029at 40.773 kb on - strand, within Atu6029at 40.773 kb on - strand, within Atu6029at 40.783 kb on + strand, within Atu6029at 40.827 kb on - strand, within Atu6029at 40.903 kb on + strand, within Atu6029at 40.911 kb on - strand, within Atu6029at 40.929 kb on + strand, within Atu6029at 40.929 kb on + strand, within Atu6029at 40.929 kb on + strand, within Atu6029at 40.932 kb on + strand, within Atu6029at 40.938 kb on - strand, within Atu6029at 40.947 kb on - strand, within Atu6029at 40.965 kb on + strand, within Atu6029at 40.985 kb on + strand, within Atu6029at 40.998 kb on + strand, within Atu6029at 41.006 kb on - strand, within Atu6029at 41.008 kb on + strand, within Atu6029at 41.054 kb on - strand, within Atu6029at 41.054 kb on - strand, within Atu6029at 41.054 kb on - strand, within Atu6029at 41.054 kb on - strand, within Atu6029at 41.054 kb on - strand, within Atu6029at 41.070 kb on + strand, within Atu6029at 41.080 kb on + strand, within Atu6029at 41.080 kb on + strand, within Atu6029at 41.080 kb on + strand, within Atu6029at 41.088 kb on - strand, within Atu6029at 41.088 kb on - strand, within Atu6029at 41.179 kb on - strandat 41.195 kb on + strandat 41.195 kb on - strandat 41.259 kb on - strand, within Atu6030at 41.259 kb on - strand, within Atu6030at 41.275 kb on + strand, within Atu6030at 41.292 kb on - strand, within Atu6030at 41.325 kb on - strand, within Atu6030at 41.351 kb on - strand, within Atu6030at 41.387 kb on - strand, within Atu6030at 41.487 kb on + strand, within Atu6030at 41.502 kb on + strand, within Atu6030at 41.502 kb on + strand, within Atu6030at 41.521 kb on + strand, within Atu6030at 41.529 kb on - strand, within Atu6030at 41.533 kb on - strand, within Atu6030at 41.534 kb on - strand, within Atu6030at 41.540 kb on + strandat 41.636 kb on + strandat 41.649 kb on + strandat 41.741 kb on - strand, within Atu6031at 41.766 kb on + strand, within Atu6031at 41.770 kb on + strand, within Atu6031at 41.814 kb on - strand, within Atu6031at 41.862 kb on + strand, within Atu6031at 41.862 kb on + strand, within Atu6031at 41.870 kb on - strand, within Atu6031at 41.870 kb on - strand, within Atu6031at 41.905 kb on - strand, within Atu6031at 41.924 kb on + strand, within Atu6031at 41.962 kb on - strand, within Atu6031at 41.972 kb on - strand, within Atu6031at 42.003 kb on - strand, within Atu6031at 42.003 kb on - strand, within Atu6031at 42.046 kb on + strand, within Atu6031at 42.046 kb on - strand, within Atu6031at 42.064 kb on - strand, within Atu6031at 42.071 kb on - strand, within Atu6031at 42.101 kb on + strand, within Atu6031at 42.115 kb on + strand, within Atu6031at 42.151 kb on + strand, within Atu6031at 42.159 kb on - strand, within Atu6031at 42.187 kb on + strand, within Atu6031at 42.195 kb on - strand, within Atu6031at 42.264 kb on - strand, within Atu6031at 42.276 kb on + strand, within Atu6031at 42.276 kb on + strand, within Atu6031at 42.283 kb on + strand, within Atu6031at 42.298 kb on + strand, within Atu6031at 42.300 kb on - strand, within Atu6031at 42.309 kb on + strand, within Atu6031at 42.398 kb on + strand, within Atu6031at 42.398 kb on + strand, within Atu6031at 42.406 kb on - strand, within Atu6031at 42.458 kb on + strand, within Atu6031at 42.500 kb on - strand, within Atu6031

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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40,334 + -0.1
40,334 + +0.2
40,334 + -0.4
40,359 + -0.1
40,395 - -0.3
40,395 - -0.4
40,397 + +0.8
40,415 + +1.1
40,490 + Atu6029 0.15 -0.0
40,510 - Atu6029 0.17 -0.3
40,598 + Atu6029 0.28 +0.5
40,598 + Atu6029 0.28 -0.2
40,598 + Atu6029 0.28 -0.0
40,600 + Atu6029 0.28 -0.1
40,622 - Atu6029 0.31 +0.2
40,682 + Atu6029 0.38 -0.7
40,728 - Atu6029 0.43 +0.8
40,760 + Atu6029 0.47 -0.7
40,760 + Atu6029 0.47 +0.2
40,765 + Atu6029 0.47 +0.1
40,773 - Atu6029 0.48 -1.4
40,773 - Atu6029 0.48 +1.4
40,783 + Atu6029 0.50 -0.3
40,827 - Atu6029 0.55 +0.8
40,903 + Atu6029 0.64 -0.2
40,911 - Atu6029 0.65 +0.1
40,929 + Atu6029 0.67 -0.2
40,929 + Atu6029 0.67 -0.2
40,929 + Atu6029 0.67 +0.6
40,932 + Atu6029 0.67 -0.2
40,938 - Atu6029 0.68 +0.1
40,947 - Atu6029 0.69 -0.3
40,965 + Atu6029 0.71 -0.6
40,985 + Atu6029 0.73 +0.1
40,998 + Atu6029 0.75 -0.3
41,006 - Atu6029 0.76 +0.5
41,008 + Atu6029 0.76 -0.0
41,054 - Atu6029 0.82 -0.2
41,054 - Atu6029 0.82 -0.1
41,054 - Atu6029 0.82 -1.9
41,054 - Atu6029 0.82 -0.3
41,054 - Atu6029 0.82 -0.9
41,070 + Atu6029 0.83 -1.2
41,080 + Atu6029 0.85 -0.1
41,080 + Atu6029 0.85 -0.1
41,080 + Atu6029 0.85 +0.2
41,088 - Atu6029 0.86 -0.0
41,088 - Atu6029 0.86 +0.4
41,179 - -0.3
41,195 + -0.2
41,195 - +0.0
41,259 - Atu6030 0.12 -0.6
41,259 - Atu6030 0.12 +0.4
41,275 + Atu6030 0.17 +0.3
41,292 - Atu6030 0.22 +0.9
41,325 - Atu6030 0.31 +1.0
41,351 - Atu6030 0.38 -0.0
41,387 - Atu6030 0.48 -0.2
41,487 + Atu6030 0.76 +0.1
41,502 + Atu6030 0.80 +0.3
41,502 + Atu6030 0.80 +1.4
41,521 + Atu6030 0.85 +0.0
41,529 - Atu6030 0.88 -0.2
41,533 - Atu6030 0.89 +0.5
41,534 - Atu6030 0.89 +0.4
41,540 + -0.1
41,636 + +0.1
41,649 + +0.3
41,741 - Atu6031 0.13 +0.5
41,766 + Atu6031 0.15 -0.1
41,770 + Atu6031 0.15 +0.0
41,814 - Atu6031 0.19 -0.1
41,862 + Atu6031 0.22 -0.0
41,862 + Atu6031 0.22 +0.5
41,870 - Atu6031 0.23 +0.7
41,870 - Atu6031 0.23 +0.2
41,905 - Atu6031 0.25 -0.4
41,924 + Atu6031 0.27 -0.2
41,962 - Atu6031 0.30 -0.2
41,972 - Atu6031 0.31 +0.3
42,003 - Atu6031 0.33 +0.2
42,003 - Atu6031 0.33 -0.1
42,046 + Atu6031 0.36 +0.2
42,046 - Atu6031 0.36 +0.2
42,064 - Atu6031 0.38 -0.3
42,071 - Atu6031 0.38 +0.7
42,101 + Atu6031 0.40 -0.8
42,115 + Atu6031 0.41 +0.3
42,151 + Atu6031 0.44 +1.3
42,159 - Atu6031 0.45 -0.2
42,187 + Atu6031 0.47 -0.4
42,195 - Atu6031 0.47 +0.0
42,264 - Atu6031 0.53 -0.4
42,276 + Atu6031 0.54 +0.0
42,276 + Atu6031 0.54 +0.2
42,283 + Atu6031 0.54 -0.2
42,298 + Atu6031 0.55 -0.1
42,300 - Atu6031 0.55 +0.5
42,309 + Atu6031 0.56 -0.2
42,398 + Atu6031 0.63 +0.6
42,398 + Atu6031 0.63 -0.5
42,406 - Atu6031 0.63 +0.4
42,458 + Atu6031 0.67 +0.2
42,500 - Atu6031 0.71 +0.3

Or see this region's nucleotide sequence