Strain Fitness in Agrobacterium fabrum C58 around Atu5441

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu8060 and Atu5440 are separated by 28 nucleotidesAtu5440 and Atu5441 are separated by 266 nucleotidesAtu5441 and Atu5442 are separated by 177 nucleotides Atu8060: Atu8060 - hypothetical protein, at 433,051 to 433,362 Atu8060 Atu5440: Atu5440 - hypothetical protein, at 433,391 to 433,621 Atu5440 Atu5441: Atu5441 - ABC transporter substrate binding protein, at 433,888 to 434,406 Atu5441 Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524 Atu5442 Position (kb) 433 434 435Strain fitness (log2 ratio) -1 0 1 2at 432.914 kb on + strandat 432.926 kb on + strandat 432.928 kb on - strandat 432.999 kb on - strandat 433.022 kb on + strandat 433.154 kb on + strand, within Atu8060at 433.154 kb on + strand, within Atu8060at 433.162 kb on - strand, within Atu8060at 433.162 kb on - strand, within Atu8060at 433.167 kb on - strand, within Atu8060at 433.170 kb on + strand, within Atu8060at 433.176 kb on + strand, within Atu8060at 433.181 kb on + strand, within Atu8060at 433.204 kb on - strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.248 kb on + strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.256 kb on - strand, within Atu8060at 433.263 kb on + strand, within Atu8060at 433.263 kb on + strand, within Atu8060at 433.320 kb on + strand, within Atu8060at 433.377 kb on - strandat 433.397 kb on - strandat 433.402 kb on + strandat 433.410 kb on - strandat 433.425 kb on + strand, within Atu5440at 433.443 kb on - strand, within Atu5440at 433.444 kb on + strand, within Atu5440at 433.507 kb on + strand, within Atu5440at 433.515 kb on - strand, within Atu5440at 433.515 kb on - strand, within Atu5440at 433.520 kb on - strand, within Atu5440at 433.538 kb on + strand, within Atu5440at 433.539 kb on - strand, within Atu5440at 433.539 kb on - strand, within Atu5440at 433.571 kb on - strand, within Atu5440at 433.594 kb on - strand, within Atu5440at 433.667 kb on - strandat 433.749 kb on - strandat 433.806 kb on + strandat 433.806 kb on - strandat 433.863 kb on - strandat 433.885 kb on - strandat 433.886 kb on + strandat 433.934 kb on + strandat 433.934 kb on + strandat 433.942 kb on - strand, within Atu5441at 433.982 kb on - strand, within Atu5441at 434.023 kb on + strand, within Atu5441at 434.023 kb on + strand, within Atu5441at 434.025 kb on + strand, within Atu5441at 434.031 kb on - strand, within Atu5441at 434.031 kb on - strand, within Atu5441at 434.111 kb on - strand, within Atu5441at 434.131 kb on + strand, within Atu5441at 434.139 kb on - strand, within Atu5441at 434.161 kb on + strand, within Atu5441at 434.184 kb on + strand, within Atu5441at 434.192 kb on - strand, within Atu5441at 434.230 kb on + strand, within Atu5441at 434.273 kb on + strand, within Atu5441at 434.313 kb on - strand, within Atu5441at 434.407 kb on - strandat 434.774 kb on - strandat 434.789 kb on - strand, within Atu5442at 434.822 kb on - strand, within Atu5442at 434.850 kb on - strand, within Atu5442at 434.900 kb on - strand, within Atu5442at 434.975 kb on + strand, within Atu5442at 434.983 kb on - strand, within Atu5442at 435.000 kb on + strand, within Atu5442at 435.000 kb on + strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.008 kb on - strand, within Atu5442at 435.078 kb on + strand, within Atu5442at 435.087 kb on - strand, within Atu5442at 435.090 kb on + strand, within Atu5442at 435.096 kb on + strand, within Atu5442at 435.147 kb on + strand, within Atu5442at 435.155 kb on - strand, within Atu5442at 435.165 kb on + strand, within Atu5442at 435.173 kb on - strand, within Atu5442at 435.175 kb on + strand, within Atu5442at 435.221 kb on + strand, within Atu5442at 435.259 kb on + strand, within Atu5442at 435.274 kb on + strand, within Atu5442at 435.277 kb on - strand, within Atu5442at 435.277 kb on - strand, within Atu5442at 435.282 kb on - strand, within Atu5442at 435.340 kb on + strand, within Atu5442at 435.360 kb on - strand, within Atu5442at 435.384 kb on + strand, within Atu5442

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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432,914 + +0.1
432,926 + +1.1
432,928 - +0.9
432,999 - +0.1
433,022 + -0.6
433,154 + Atu8060 0.33 -0.1
433,154 + Atu8060 0.33 +1.1
433,162 - Atu8060 0.36 +0.0
433,162 - Atu8060 0.36 +0.5
433,167 - Atu8060 0.37 +0.2
433,170 + Atu8060 0.38 +0.7
433,176 + Atu8060 0.40 +0.0
433,181 + Atu8060 0.42 -0.0
433,204 - Atu8060 0.49 -0.2
433,248 + Atu8060 0.63 -0.2
433,248 + Atu8060 0.63 -0.4
433,248 + Atu8060 0.63 +2.5
433,256 - Atu8060 0.66 +0.0
433,256 - Atu8060 0.66 +0.1
433,256 - Atu8060 0.66 -0.7
433,256 - Atu8060 0.66 -0.1
433,263 + Atu8060 0.68 +0.2
433,263 + Atu8060 0.68 +0.1
433,320 + Atu8060 0.86 -0.3
433,377 - -0.3
433,397 - +0.5
433,402 + -0.1
433,410 - -0.3
433,425 + Atu5440 0.15 -0.2
433,443 - Atu5440 0.23 +0.1
433,444 + Atu5440 0.23 -1.2
433,507 + Atu5440 0.50 -0.1
433,515 - Atu5440 0.54 -1.1
433,515 - Atu5440 0.54 -0.3
433,520 - Atu5440 0.56 -0.0
433,538 + Atu5440 0.64 -0.9
433,539 - Atu5440 0.64 +0.9
433,539 - Atu5440 0.64 +0.4
433,571 - Atu5440 0.78 -0.5
433,594 - Atu5440 0.88 -0.1
433,667 - -1.1
433,749 - +0.4
433,806 + -0.1
433,806 - -0.3
433,863 - -0.1
433,885 - +0.4
433,886 + -0.7
433,934 + -0.1
433,934 + +0.8
433,942 - Atu5441 0.10 +0.2
433,982 - Atu5441 0.18 +0.0
434,023 + Atu5441 0.26 -0.1
434,023 + Atu5441 0.26 +0.9
434,025 + Atu5441 0.26 +0.0
434,031 - Atu5441 0.28 +0.1
434,031 - Atu5441 0.28 +0.3
434,111 - Atu5441 0.43 +0.1
434,131 + Atu5441 0.47 +0.5
434,139 - Atu5441 0.48 -1.7
434,161 + Atu5441 0.53 +1.2
434,184 + Atu5441 0.57 +0.2
434,192 - Atu5441 0.59 +1.2
434,230 + Atu5441 0.66 -0.0
434,273 + Atu5441 0.74 +0.1
434,313 - Atu5441 0.82 +0.8
434,407 - +0.7
434,774 - +0.1
434,789 - Atu5442 0.11 +0.2
434,822 - Atu5442 0.12 -0.1
434,850 - Atu5442 0.14 -0.1
434,900 - Atu5442 0.16 -0.2
434,975 + Atu5442 0.20 -0.4
434,983 - Atu5442 0.21 +0.1
435,000 + Atu5442 0.21 +0.6
435,000 + Atu5442 0.21 -0.3
435,008 - Atu5442 0.22 -0.4
435,008 - Atu5442 0.22 +0.5
435,008 - Atu5442 0.22 +1.0
435,078 + Atu5442 0.25 +0.1
435,087 - Atu5442 0.26 -0.0
435,090 + Atu5442 0.26 +0.3
435,096 + Atu5442 0.26 +0.3
435,147 + Atu5442 0.29 +0.3
435,155 - Atu5442 0.29 -0.2
435,165 + Atu5442 0.30 -1.1
435,173 - Atu5442 0.30 -0.6
435,175 + Atu5442 0.30 +0.4
435,221 + Atu5442 0.33 +0.4
435,259 + Atu5442 0.35 -0.7
435,274 + Atu5442 0.36 -0.3
435,277 - Atu5442 0.36 +0.5
435,277 - Atu5442 0.36 +0.8
435,282 - Atu5442 0.36 +0.3
435,340 + Atu5442 0.39 -0.3
435,360 - Atu5442 0.40 +0.4
435,384 + Atu5442 0.41 -0.1

Or see this region's nucleotide sequence