Strain Fitness in Agrobacterium fabrum C58 around Atu1323
Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Linalool 5 mM |
---|---|---|---|---|---|
remove | |||||
1,310,983 | - | Atu1321 | 0.14 | +0.5 | |
1,311,167 | + | Atu1321 | 0.86 | -0.1 | |
1,311,167 | + | Atu1321 | 0.86 | -0.1 | |
1,311,175 | - | Atu1321 | 0.89 | -0.0 | |
1,311,400 | - | +0.7 | |||
1,311,402 | + | +0.4 | |||
1,311,402 | + | +0.2 | |||
1,311,410 | - | +1.3 | |||
1,311,462 | + | +0.3 | |||
1,311,462 | + | +0.3 | |||
1,311,462 | + | +0.2 | |||
1,311,462 | + | +0.1 | |||
1,311,462 | + | -0.3 | |||
1,311,462 | + | -0.3 | |||
1,311,462 | + | -2.0 | |||
1,311,462 | + | -0.3 | |||
1,311,462 | + | +0.7 | |||
1,311,470 | - | +0.6 | |||
1,311,470 | - | +0.1 | |||
1,311,470 | - | -0.6 | |||
1,311,470 | - | +0.4 | |||
1,311,540 | + | Atu1322 | 0.12 | +0.5 | |
1,311,627 | + | Atu1322 | 0.29 | +0.4 | |
1,311,627 | + | Atu1322 | 0.29 | -0.0 | |
1,311,627 | + | Atu1322 | 0.29 | -0.0 | |
1,311,635 | - | Atu1322 | 0.31 | -0.1 | |
1,311,723 | - | Atu1322 | 0.48 | -0.2 | |
1,311,726 | + | Atu1322 | 0.48 | -0.3 | |
1,311,769 | - | Atu1322 | 0.57 | -0.0 | |
1,311,895 | - | Atu1322 | 0.82 | +0.1 | |
1,311,900 | + | Atu1322 | 0.83 | +1.6 | |
1,311,920 | + | Atu1322 | 0.86 | +0.3 | |
1,311,974 | - | +0.9 | |||
1,312,015 | - | Atu1323 | 0.11 | -0.1 | |
1,312,091 | - | Atu1323 | 0.29 | +0.5 | |
1,312,182 | - | Atu1323 | 0.51 | +0.4 | |
1,312,226 | - | Atu1323 | 0.62 | +0.0 | |
1,312,368 | + | -0.7 | |||
1,312,368 | + | -0.0 |
Or see this region's nucleotide sequence