Strain Fitness in Agrobacterium fabrum C58 around Atu0696

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0695 and Atu0696 overlap by 7 nucleotidesAtu0696 and Atu0697 are separated by 204 nucleotides Atu0695: Atu0695 - 3-deoxy-D-manno-octulosonic acid transferase-like protein, at 693,451 to 694,773 Atu0695 Atu0696: Atu0696 - phosphatase, at 694,767 to 695,504 Atu0696 Atu0697: Atu0697 - tetraacyldisaccharide 4'-kinase, at 695,709 to 696,755 Atu0697 Position (kb) 694 695 696Strain fitness (log2 ratio) -1 0 1at 694.710 kb on - strandat 694.712 kb on + strandat 694.799 kb on + strandat 694.807 kb on - strandat 694.906 kb on - strand, within Atu0696at 694.965 kb on - strand, within Atu0696at 694.973 kb on - strand, within Atu0696at 695.134 kb on + strand, within Atu0696at 695.134 kb on + strand, within Atu0696at 695.135 kb on + strand, within Atu0696at 695.142 kb on - strand, within Atu0696at 695.143 kb on - strand, within Atu0696at 695.149 kb on + strand, within Atu0696at 695.508 kb on - strandat 695.656 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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694,710 - -0.4
694,712 + -0.5
694,799 + -0.4
694,807 - +0.2
694,906 - Atu0696 0.19 +0.6
694,965 - Atu0696 0.27 +0.3
694,973 - Atu0696 0.28 -0.3
695,134 + Atu0696 0.50 +0.1
695,134 + Atu0696 0.50 +0.2
695,135 + Atu0696 0.50 +0.4
695,142 - Atu0696 0.51 +1.3
695,143 - Atu0696 0.51 -0.9
695,149 + Atu0696 0.52 +0.0
695,508 - -1.1
695,656 + -1.0

Or see this region's nucleotide sequence