Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0602 and Atu0603 are separated by 123 nucleotides Atu0603 and Atu0604 are separated by 110 nucleotides Atu0604 and Atu0605 are separated by 87 nucleotides
Atu0602: Atu0602 - glutamine synthetase, at 588,760 to 590,199
Atu0602
Atu0603: Atu0603 - hypothetical protein, at 590,323 to 591,507
Atu0603
Atu0604: Atu0604 - hypothetical protein, at 591,618 to 591,965
Atu0604
Atu0605: Atu0605 - transcriptional regulator, LysR family, at 592,053 to 592,925
Atu0605
Position (kb) 590
591
592 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.408 kb on + strand, within Atu0602 at 589.556 kb on + strand, within Atu0602 at 589.725 kb on + strand, within Atu0602 at 590.058 kb on + strand at 590.058 kb on + strand at 590.058 kb on + strand at 590.115 kb on + strand at 590.135 kb on - strand at 590.420 kb on + strand at 590.430 kb on + strand at 590.555 kb on + strand, within Atu0603 at 590.636 kb on - strand, within Atu0603 at 590.878 kb on - strand, within Atu0603 at 591.004 kb on + strand, within Atu0603 at 591.062 kb on + strand, within Atu0603 at 591.062 kb on + strand, within Atu0603 at 591.070 kb on - strand, within Atu0603 at 591.283 kb on + strand, within Atu0603 at 591.291 kb on - strand, within Atu0603 at 591.291 kb on - strand, within Atu0603 at 591.311 kb on + strand, within Atu0603 at 591.326 kb on - strand, within Atu0603 at 591.372 kb on - strand, within Atu0603 at 591.425 kb on + strand at 591.425 kb on + strand at 591.425 kb on + strand at 591.468 kb on + strand at 591.477 kb on - strand at 591.517 kb on + strand at 591.614 kb on + strand at 591.632 kb on - strand at 591.632 kb on - strand at 591.678 kb on - strand, within Atu0604 at 591.774 kb on + strand, within Atu0604 at 591.796 kb on - strand, within Atu0604 at 591.859 kb on + strand, within Atu0604 at 591.947 kb on - strand at 592.000 kb on - strand at 592.103 kb on - strand at 592.137 kb on + strand at 592.137 kb on + strand at 592.163 kb on + strand, within Atu0605 at 592.197 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.262 kb on + strand, within Atu0605 at 592.334 kb on + strand, within Atu0605 at 592.396 kb on - strand, within Atu0605 at 592.399 kb on + strand, within Atu0605
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 589,408 + Atu0602 0.45 -0.4 589,556 + Atu0602 0.55 -0.0 589,725 + Atu0602 0.67 -0.4 590,058 + +1.8 590,058 + -0.1 590,058 + -0.6 590,115 + -0.4 590,135 - -0.2 590,420 + +0.3 590,430 + +0.2 590,555 + Atu0603 0.20 +0.2 590,636 - Atu0603 0.26 -0.0 590,878 - Atu0603 0.47 -1.6 591,004 + Atu0603 0.57 +0.4 591,062 + Atu0603 0.62 -0.0 591,062 + Atu0603 0.62 +1.2 591,070 - Atu0603 0.63 +1.2 591,283 + Atu0603 0.81 +0.1 591,291 - Atu0603 0.82 +0.4 591,291 - Atu0603 0.82 +0.6 591,311 + Atu0603 0.83 +0.4 591,326 - Atu0603 0.85 +0.4 591,372 - Atu0603 0.89 +0.2 591,425 + +0.7 591,425 + -0.3 591,425 + +0.1 591,468 + -0.2 591,477 - -0.0 591,517 + -0.1 591,614 + -0.5 591,632 - +0.1 591,632 - +0.0 591,678 - Atu0604 0.17 -0.3 591,774 + Atu0604 0.45 +0.5 591,796 - Atu0604 0.51 -0.2 591,859 + Atu0604 0.69 -0.6 591,947 - -0.2 592,000 - -0.5 592,103 - -0.2 592,137 + +0.3 592,137 + +0.1 592,163 + Atu0605 0.13 -0.8 592,197 + Atu0605 0.16 -0.0 592,262 + Atu0605 0.24 -0.1 592,262 + Atu0605 0.24 +1.5 592,262 + Atu0605 0.24 -2.2 592,334 + Atu0605 0.32 -0.3 592,396 - Atu0605 0.39 -0.2 592,399 + Atu0605 0.40 -0.1
Or see this region's nucleotide sequence