Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0180 and Atu0181 overlap by 4 nucleotides Atu0181 and Atu0182 are separated by 82 nucleotides Atu0182 and Atu0183 are separated by 9 nucleotides Atu0183 and Atu0184 are separated by 141 nucleotides
Atu0180: Atu0180 - hypothetical protein, at 183,869 to 184,480
Atu0180
Atu0181: Atu0181 - hypothetical protein, at 184,477 to 184,938
Atu0181
Atu0182: Atu0182 - transcriptional regulator, GntR family, at 185,021 to 185,758
Atu0182
Atu0183: Atu0183 - dihydrodipicolinate reductase, at 185,768 to 186,595
Atu0183
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Position (kb) 185
186 Strain fitness (log2 ratio) -1
0
1
2 at 184.121 kb on - strand, within Atu0180 at 184.158 kb on + strand, within Atu0180 at 184.238 kb on + strand, within Atu0180 at 184.251 kb on + strand, within Atu0180 at 184.259 kb on - strand, within Atu0180 at 184.339 kb on + strand, within Atu0180 at 184.366 kb on + strand, within Atu0180 at 184.400 kb on - strand, within Atu0180 at 184.475 kb on + strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.483 kb on - strand at 184.487 kb on + strand at 184.582 kb on - strand, within Atu0181 at 184.618 kb on - strand, within Atu0181 at 184.694 kb on - strand, within Atu0181 at 184.782 kb on - strand, within Atu0181 at 184.843 kb on + strand, within Atu0181 at 185.086 kb on + strand at 185.086 kb on + strand at 185.220 kb on + strand, within Atu0182 at 185.264 kb on - strand, within Atu0182 at 185.323 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.449 kb on + strand, within Atu0182 at 185.479 kb on + strand, within Atu0182 at 186.718 kb on - strand at 186.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 184,121 - Atu0180 0.41 -0.1 184,158 + Atu0180 0.47 -0.3 184,238 + Atu0180 0.60 +0.7 184,251 + Atu0180 0.62 -0.2 184,259 - Atu0180 0.64 -0.2 184,339 + Atu0180 0.77 -0.1 184,366 + Atu0180 0.81 -0.1 184,400 - Atu0180 0.87 -0.2 184,475 + -0.5 184,483 - +0.6 184,483 - -0.1 184,483 - +0.0 184,487 + +0.7 184,582 - Atu0181 0.23 -0.1 184,618 - Atu0181 0.31 +0.6 184,694 - Atu0181 0.47 -1.3 184,782 - Atu0181 0.66 -0.3 184,843 + Atu0181 0.79 -0.1 185,086 + +0.3 185,086 + +0.2 185,220 + Atu0182 0.27 +0.2 185,264 - Atu0182 0.33 -0.2 185,323 + Atu0182 0.41 +2.6 185,449 + Atu0182 0.58 +0.4 185,449 + Atu0182 0.58 +0.0 185,479 + Atu0182 0.62 +0.2 186,718 - +0.4 186,721 + +1.4
Or see this region's nucleotide sequence