Strain Fitness in Agrobacterium fabrum C58 around Atu5480

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5479 and Atu5480 are separated by 13 nucleotidesAtu5480 and Atu5481 overlap by 4 nucleotidesAtu5481 and Atu5482 are separated by 33 nucleotides Atu5479: Atu5479 - acetylornithine deacetylase, at 471,138 to 472,301 Atu5479 Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079 Atu5480 Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804 Atu5481 Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647 Atu5482 Position (kb) 472 473 474Strain fitness (log2 ratio) -1 0 1 2 3at 471.337 kb on + strand, within Atu5479at 471.350 kb on + strand, within Atu5479at 471.359 kb on + strand, within Atu5479at 471.359 kb on + strand, within Atu5479at 471.360 kb on - strand, within Atu5479at 471.411 kb on + strand, within Atu5479at 471.524 kb on + strand, within Atu5479at 471.600 kb on + strand, within Atu5479at 471.600 kb on + strand, within Atu5479at 471.607 kb on - strand, within Atu5479at 471.655 kb on - strand, within Atu5479at 471.660 kb on + strand, within Atu5479at 471.661 kb on + strand, within Atu5479at 471.688 kb on + strand, within Atu5479at 471.757 kb on + strand, within Atu5479at 471.758 kb on - strand, within Atu5479at 471.765 kb on - strand, within Atu5479at 471.771 kb on + strand, within Atu5479at 471.771 kb on + strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.779 kb on - strand, within Atu5479at 471.806 kb on - strand, within Atu5479at 471.826 kb on - strand, within Atu5479at 471.878 kb on + strand, within Atu5479at 471.905 kb on - strand, within Atu5479at 471.907 kb on + strand, within Atu5479at 471.912 kb on + strand, within Atu5479at 471.949 kb on + strand, within Atu5479at 471.949 kb on + strand, within Atu5479at 472.025 kb on + strand, within Atu5479at 472.042 kb on + strand, within Atu5479at 472.163 kb on + strand, within Atu5479at 472.318 kb on + strandat 472.498 kb on - strand, within Atu5480at 472.518 kb on - strand, within Atu5480at 472.518 kb on - strand, within Atu5480at 472.537 kb on - strand, within Atu5480at 472.542 kb on + strand, within Atu5480at 472.557 kb on - strand, within Atu5480at 472.564 kb on + strand, within Atu5480at 472.727 kb on + strand, within Atu5480at 472.762 kb on + strand, within Atu5480at 472.896 kb on + strand, within Atu5480at 472.904 kb on - strand, within Atu5480at 472.913 kb on + strand, within Atu5480at 472.946 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 472.979 kb on - strand, within Atu5480at 473.121 kb on + strandat 473.178 kb on - strand, within Atu5481at 473.243 kb on - strand, within Atu5481at 473.398 kb on + strand, within Atu5481at 473.398 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.406 kb on - strand, within Atu5481at 473.474 kb on + strand, within Atu5481at 473.500 kb on - strand, within Atu5481at 473.512 kb on + strand, within Atu5481at 473.603 kb on + strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.611 kb on - strand, within Atu5481at 473.688 kb on + strand, within Atu5481at 473.736 kb on - strandat 473.752 kb on - strandat 473.756 kb on + strandat 473.781 kb on + strandat 473.844 kb on - strandat 473.964 kb on - strand, within Atu5482at 474.014 kb on + strand, within Atu5482at 474.018 kb on - strand, within Atu5482at 474.026 kb on + strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.034 kb on - strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.036 kb on + strand, within Atu5482at 474.039 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.044 kb on - strand, within Atu5482at 474.049 kb on - strand, within Atu5482

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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471,337 + Atu5479 0.17 -0.4
471,350 + Atu5479 0.18 -0.1
471,359 + Atu5479 0.19 -1.2
471,359 + Atu5479 0.19 -0.5
471,360 - Atu5479 0.19 +0.1
471,411 + Atu5479 0.23 +0.3
471,524 + Atu5479 0.33 +0.5
471,600 + Atu5479 0.40 +0.2
471,600 + Atu5479 0.40 +0.7
471,607 - Atu5479 0.40 +0.2
471,655 - Atu5479 0.44 +0.0
471,660 + Atu5479 0.45 +0.1
471,661 + Atu5479 0.45 -0.5
471,688 + Atu5479 0.47 +0.5
471,757 + Atu5479 0.53 +0.3
471,758 - Atu5479 0.53 +0.4
471,765 - Atu5479 0.54 +0.2
471,771 + Atu5479 0.54 +0.5
471,771 + Atu5479 0.54 +0.3
471,779 - Atu5479 0.55 -0.2
471,779 - Atu5479 0.55 +0.4
471,779 - Atu5479 0.55 -0.1
471,779 - Atu5479 0.55 +0.5
471,779 - Atu5479 0.55 +1.1
471,779 - Atu5479 0.55 +0.6
471,806 - Atu5479 0.57 -1.0
471,826 - Atu5479 0.59 -0.1
471,878 + Atu5479 0.64 -0.6
471,905 - Atu5479 0.66 +0.1
471,907 + Atu5479 0.66 -1.4
471,912 + Atu5479 0.66 +0.9
471,949 + Atu5479 0.70 -0.4
471,949 + Atu5479 0.70 +0.2
472,025 + Atu5479 0.76 -0.2
472,042 + Atu5479 0.78 +0.1
472,163 + Atu5479 0.88 +0.1
472,318 + +0.0
472,498 - Atu5480 0.24 -0.1
472,518 - Atu5480 0.27 +0.2
472,518 - Atu5480 0.27 +0.9
472,537 - Atu5480 0.29 +0.1
472,542 + Atu5480 0.30 +0.2
472,557 - Atu5480 0.32 +0.2
472,564 + Atu5480 0.33 +1.3
472,727 + Atu5480 0.54 +0.1
472,762 + Atu5480 0.58 -0.3
472,896 + Atu5480 0.76 -1.5
472,904 - Atu5480 0.77 +0.5
472,913 + Atu5480 0.78 -1.3
472,946 - Atu5480 0.82 -0.2
472,979 - Atu5480 0.87 +0.2
472,979 - Atu5480 0.87 +2.3
473,121 + -0.3
473,178 - Atu5481 0.14 +0.7
473,243 - Atu5481 0.23 +1.5
473,398 + Atu5481 0.44 +0.5
473,398 - Atu5481 0.44 -0.1
473,406 - Atu5481 0.45 -0.1
473,406 - Atu5481 0.45 +0.5
473,474 + Atu5481 0.55 -0.3
473,500 - Atu5481 0.58 -0.2
473,512 + Atu5481 0.60 -0.6
473,603 + Atu5481 0.72 -0.1
473,611 - Atu5481 0.73 +0.3
473,611 - Atu5481 0.73 -0.4
473,688 + Atu5481 0.84 +0.1
473,736 - -0.1
473,752 - -0.2
473,756 + +0.9
473,781 + +0.1
473,844 - -0.1
473,964 - Atu5482 0.16 -0.3
474,014 + Atu5482 0.22 -0.2
474,018 - Atu5482 0.22 +0.2
474,026 + Atu5482 0.23 +0.1
474,034 - Atu5482 0.24 +0.6
474,034 - Atu5482 0.24 +0.8
474,034 - Atu5482 0.24 +0.3
474,034 - Atu5482 0.24 -0.2
474,036 + Atu5482 0.24 -1.5
474,036 + Atu5482 0.24 +0.9
474,036 + Atu5482 0.24 -1.6
474,039 - Atu5482 0.25 +0.1
474,044 - Atu5482 0.25 +2.8
474,044 - Atu5482 0.25 -0.0
474,049 - Atu5482 0.26 -1.6

Or see this region's nucleotide sequence