Strain Fitness in Agrobacterium fabrum C58 around Atu4114

Experiment: Linalool 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu4113 and Atu4114 are separated by 62 nucleotidesAtu4114 and Atu4115 overlap by 4 nucleotidesAtu4115 and Atu4116 are separated by 3 nucleotides Atu4113: Atu4113 - dipeptide ABC transporter substrate-binding protein, at 1,232,024 to 1,233,628 Atu4113 Atu4114: Atu4114 - dipeptide ABC transporter permease, at 1,233,691 to 1,234,698 Atu4114 Atu4115: Atu4115 - dipeptide ABC transporter permease, at 1,234,695 to 1,235,609 Atu4115 Atu4116: Atu4116 - dipeptide ABC transporter ATPase, at 1,235,613 to 1,236,452 Atu4116 Position (kb) 1233 1234 1235Strain fitness (log2 ratio) -1 0 1at 1232.699 kb on - strand, within Atu4113at 1232.713 kb on + strand, within Atu4113at 1232.831 kb on - strand, within Atu4113at 1232.831 kb on - strand, within Atu4113at 1232.887 kb on - strand, within Atu4113at 1232.929 kb on - strand, within Atu4113at 1232.948 kb on + strand, within Atu4113at 1232.956 kb on - strand, within Atu4113at 1232.956 kb on - strand, within Atu4113at 1232.989 kb on - strand, within Atu4113at 1232.990 kb on + strand, within Atu4113at 1233.038 kb on + strand, within Atu4113at 1233.162 kb on + strand, within Atu4113at 1233.204 kb on - strand, within Atu4113at 1233.358 kb on - strand, within Atu4113at 1233.366 kb on - strand, within Atu4113at 1233.563 kb on - strandat 1233.751 kb on + strandat 1233.788 kb on + strandat 1233.909 kb on + strand, within Atu4114at 1234.193 kb on + strand, within Atu4114at 1234.229 kb on + strand, within Atu4114at 1234.229 kb on + strand, within Atu4114at 1234.302 kb on + strand, within Atu4114at 1234.404 kb on + strand, within Atu4114at 1234.404 kb on + strand, within Atu4114at 1234.478 kb on + strand, within Atu4114at 1234.511 kb on + strand, within Atu4114at 1234.526 kb on + strand, within Atu4114at 1234.589 kb on + strand, within Atu4114at 1234.597 kb on - strand, within Atu4114at 1234.600 kb on - strandat 1234.632 kb on - strandat 1234.669 kb on - strandat 1234.669 kb on - strandat 1234.740 kb on + strandat 1234.880 kb on + strand, within Atu4115at 1234.920 kb on + strand, within Atu4115at 1234.995 kb on + strand, within Atu4115at 1235.042 kb on + strand, within Atu4115at 1235.258 kb on - strand, within Atu4115at 1235.287 kb on - strand, within Atu4115at 1235.324 kb on + strand, within Atu4115at 1235.332 kb on - strand, within Atu4115at 1235.347 kb on + strand, within Atu4115at 1235.355 kb on - strand, within Atu4115at 1235.431 kb on + strand, within Atu4115at 1235.505 kb on + strand, within Atu4115at 1235.566 kb on - strandat 1235.677 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
remove
1,232,699 - Atu4113 0.42 -0.3
1,232,713 + Atu4113 0.43 +0.4
1,232,831 - Atu4113 0.50 +0.1
1,232,831 - Atu4113 0.50 -0.3
1,232,887 - Atu4113 0.54 +0.3
1,232,929 - Atu4113 0.56 +0.7
1,232,948 + Atu4113 0.58 +0.2
1,232,956 - Atu4113 0.58 +0.3
1,232,956 - Atu4113 0.58 +0.2
1,232,989 - Atu4113 0.60 +0.8
1,232,990 + Atu4113 0.60 +0.3
1,233,038 + Atu4113 0.63 -0.1
1,233,162 + Atu4113 0.71 +0.1
1,233,204 - Atu4113 0.74 +0.3
1,233,358 - Atu4113 0.83 -0.2
1,233,366 - Atu4113 0.84 +0.2
1,233,563 - -0.3
1,233,751 + +0.3
1,233,788 + -0.6
1,233,909 + Atu4114 0.22 +0.6
1,234,193 + Atu4114 0.50 -0.1
1,234,229 + Atu4114 0.53 -0.5
1,234,229 + Atu4114 0.53 +0.7
1,234,302 + Atu4114 0.61 -0.0
1,234,404 + Atu4114 0.71 -0.1
1,234,404 + Atu4114 0.71 +1.0
1,234,478 + Atu4114 0.78 +0.9
1,234,511 + Atu4114 0.81 +0.8
1,234,526 + Atu4114 0.83 -0.3
1,234,589 + Atu4114 0.89 +0.0
1,234,597 - Atu4114 0.90 +0.0
1,234,600 - -0.0
1,234,632 - +0.1
1,234,669 - +0.8
1,234,669 - +0.4
1,234,740 + -0.7
1,234,880 + Atu4115 0.20 -0.6
1,234,920 + Atu4115 0.25 +0.1
1,234,995 + Atu4115 0.33 +0.2
1,235,042 + Atu4115 0.38 -0.9
1,235,258 - Atu4115 0.62 -0.0
1,235,287 - Atu4115 0.65 -0.5
1,235,324 + Atu4115 0.69 +0.1
1,235,332 - Atu4115 0.70 -0.5
1,235,347 + Atu4115 0.71 +0.4
1,235,355 - Atu4115 0.72 -0.4
1,235,431 + Atu4115 0.80 +0.7
1,235,505 + Atu4115 0.89 -0.1
1,235,566 - +0.6
1,235,677 - +0.6

Or see this region's nucleotide sequence