Strain Fitness in Agrobacterium fabrum C58 around Atu3843

Experiment: Linalool 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu3841 and Atu3842 overlap by 20 nucleotidesAtu3842 and Atu3843 are separated by 342 nucleotidesAtu3843 and Atu3844 are separated by 51 nucleotidesAtu3844 and Atu3845 are separated by 72 nucleotides Atu3841: Atu3841 - hypothetical protein, at 936,047 to 936,523 Atu3841 Atu3842: Atu3842 - hypothetical protein, at 936,504 to 937,094 Atu3842 Atu3843: Atu3843 - hypothetical protein, at 937,437 to 938,579 Atu3843 Atu3844: Atu3844 - hypothetical protein, at 938,631 to 939,143 Atu3844 Atu3845: Atu3845 - hypothetical protein, at 939,216 to 939,896 Atu3845 Position (kb) 937 938 939Strain fitness (log2 ratio) -2 -1 0 1 2at 936.506 kb on + strandat 936.507 kb on + strandat 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.594 kb on - strand, within Atu3842at 936.623 kb on - strand, within Atu3842at 936.768 kb on + strand, within Atu3842at 936.790 kb on - strand, within Atu3842at 936.861 kb on + strand, within Atu3842at 936.864 kb on - strand, within Atu3842at 936.926 kb on - strand, within Atu3842at 936.988 kb on + strand, within Atu3842at 936.993 kb on + strand, within Atu3842at 937.001 kb on - strand, within Atu3842at 937.063 kb on + strandat 937.089 kb on - strandat 937.105 kb on + strandat 937.148 kb on - strandat 937.148 kb on - strandat 937.160 kb on + strandat 937.170 kb on + strandat 937.237 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.256 kb on + strandat 937.264 kb on - strandat 937.264 kb on - strandat 937.573 kb on + strand, within Atu3843at 937.608 kb on - strand, within Atu3843at 937.610 kb on + strand, within Atu3843at 937.623 kb on - strand, within Atu3843at 937.631 kb on + strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.639 kb on - strand, within Atu3843at 937.649 kb on - strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.652 kb on + strand, within Atu3843at 937.659 kb on + strand, within Atu3843at 937.660 kb on - strand, within Atu3843at 937.683 kb on - strand, within Atu3843at 937.685 kb on - strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.693 kb on + strand, within Atu3843at 937.695 kb on + strand, within Atu3843at 937.701 kb on - strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.721 kb on + strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.729 kb on - strand, within Atu3843at 937.734 kb on - strand, within Atu3843at 937.745 kb on - strand, within Atu3843at 937.824 kb on - strand, within Atu3843at 937.855 kb on + strand, within Atu3843at 937.881 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.971 kb on - strand, within Atu3843at 937.989 kb on + strand, within Atu3843at 937.997 kb on - strand, within Atu3843at 938.034 kb on - strand, within Atu3843at 938.039 kb on + strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.047 kb on - strand, within Atu3843at 938.096 kb on + strand, within Atu3843at 938.104 kb on - strand, within Atu3843at 938.140 kb on - strand, within Atu3843at 938.236 kb on - strand, within Atu3843at 938.250 kb on + strand, within Atu3843at 938.312 kb on - strand, within Atu3843at 938.522 kb on - strandat 938.536 kb on + strandat 938.574 kb on + strandat 938.581 kb on - strandat 938.586 kb on + strandat 938.608 kb on - strandat 938.667 kb on + strandat 938.721 kb on + strand, within Atu3844at 938.721 kb on + strand, within Atu3844at 938.723 kb on - strand, within Atu3844at 938.728 kb on - strand, within Atu3844at 938.739 kb on + strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.742 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.747 kb on - strand, within Atu3844at 938.791 kb on - strand, within Atu3844at 938.839 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 938.985 kb on + strand, within Atu3844at 939.023 kb on + strand, within Atu3844at 939.077 kb on + strand, within Atu3844at 939.154 kb on - strandat 939.215 kb on + strandat 939.226 kb on + strandat 939.226 kb on + strandat 939.266 kb on + strandat 939.266 kb on + strandat 939.268 kb on + strandat 939.268 kb on + strandat 939.369 kb on - strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.371 kb on + strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.379 kb on - strand, within Atu3845at 939.408 kb on + strand, within Atu3845at 939.430 kb on + strand, within Atu3845at 939.469 kb on + strand, within Atu3845at 939.546 kb on - strand, within Atu3845at 939.560 kb on + strand, within Atu3845at 939.573 kb on - strand, within Atu3845at 939.578 kb on + strand, within Atu3845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
remove
936,506 + +0.2
936,507 + -0.3
936,594 - Atu3842 0.15 -0.3
936,594 - Atu3842 0.15 -0.0
936,594 - Atu3842 0.15 -0.2
936,623 - Atu3842 0.20 +0.0
936,768 + Atu3842 0.45 +0.3
936,790 - Atu3842 0.48 -0.3
936,861 + Atu3842 0.60 +0.8
936,864 - Atu3842 0.61 +0.0
936,926 - Atu3842 0.71 -0.1
936,988 + Atu3842 0.82 +0.7
936,993 + Atu3842 0.83 -0.3
937,001 - Atu3842 0.84 +1.1
937,063 + -0.3
937,089 - +0.1
937,105 + -0.1
937,148 - +0.1
937,148 - +0.7
937,160 + +0.1
937,170 + +0.0
937,237 + +0.7
937,256 + -0.2
937,256 + +0.2
937,256 + +0.0
937,256 + -0.7
937,256 + +0.2
937,264 - -0.5
937,264 - -0.1
937,573 + Atu3843 0.12 -0.2
937,608 - Atu3843 0.15 -0.3
937,610 + Atu3843 0.15 +0.1
937,623 - Atu3843 0.16 +0.5
937,631 + Atu3843 0.17 -0.2
937,639 - Atu3843 0.18 -0.2
937,639 - Atu3843 0.18 -0.4
937,649 - Atu3843 0.19 -1.3
937,652 + Atu3843 0.19 +0.6
937,652 + Atu3843 0.19 +0.3
937,652 + Atu3843 0.19 +0.1
937,659 + Atu3843 0.19 +0.7
937,660 - Atu3843 0.20 -1.9
937,683 - Atu3843 0.22 -0.1
937,685 - Atu3843 0.22 +0.1
937,693 + Atu3843 0.22 +0.1
937,693 + Atu3843 0.22 -0.9
937,695 + Atu3843 0.23 -0.1
937,701 - Atu3843 0.23 -0.3
937,721 + Atu3843 0.25 -0.3
937,721 + Atu3843 0.25 -0.3
937,721 + Atu3843 0.25 -0.2
937,721 + Atu3843 0.25 +0.2
937,721 + Atu3843 0.25 +1.0
937,729 - Atu3843 0.26 -0.9
937,729 - Atu3843 0.26 -0.1
937,734 - Atu3843 0.26 +0.1
937,745 - Atu3843 0.27 +0.3
937,824 - Atu3843 0.34 -0.3
937,855 + Atu3843 0.37 -0.1
937,881 - Atu3843 0.39 +0.0
937,971 - Atu3843 0.47 +0.1
937,971 - Atu3843 0.47 +0.1
937,989 + Atu3843 0.48 +0.9
937,997 - Atu3843 0.49 -0.6
938,034 - Atu3843 0.52 +0.0
938,039 + Atu3843 0.53 +0.0
938,047 - Atu3843 0.53 +1.1
938,047 - Atu3843 0.53 -0.4
938,096 + Atu3843 0.58 +0.1
938,104 - Atu3843 0.58 -0.1
938,140 - Atu3843 0.62 -0.4
938,236 - Atu3843 0.70 +1.9
938,250 + Atu3843 0.71 -0.5
938,312 - Atu3843 0.77 +0.1
938,522 - +0.5
938,536 + +0.8
938,574 + -0.1
938,581 - -0.2
938,586 + -0.9
938,608 - -0.2
938,667 + +0.3
938,721 + Atu3844 0.18 +0.2
938,721 + Atu3844 0.18 -0.6
938,723 - Atu3844 0.18 -0.7
938,728 - Atu3844 0.19 +0.7
938,739 + Atu3844 0.21 +0.4
938,742 - Atu3844 0.22 -0.2
938,742 - Atu3844 0.22 -0.1
938,747 - Atu3844 0.23 -2.4
938,747 - Atu3844 0.23 -0.4
938,791 - Atu3844 0.31 -0.1
938,839 + Atu3844 0.41 +0.7
938,985 + Atu3844 0.69 -0.7
938,985 + Atu3844 0.69 +0.1
939,023 + Atu3844 0.76 +0.2
939,077 + Atu3844 0.87 +0.8
939,154 - +0.7
939,215 + +0.1
939,226 + +0.2
939,226 + +0.1
939,266 + +0.5
939,266 + +0.1
939,268 + +0.2
939,268 + -0.7
939,369 - Atu3845 0.22 +0.5
939,371 + Atu3845 0.23 -0.3
939,371 + Atu3845 0.23 +1.1
939,371 + Atu3845 0.23 +0.2
939,379 - Atu3845 0.24 +0.1
939,379 - Atu3845 0.24 -0.2
939,408 + Atu3845 0.28 -0.2
939,430 + Atu3845 0.31 +0.9
939,469 + Atu3845 0.37 -0.9
939,546 - Atu3845 0.48 +0.3
939,560 + Atu3845 0.51 -0.6
939,573 - Atu3845 0.52 -0.1
939,578 + Atu3845 0.53 -0.5

Or see this region's nucleotide sequence