Strain Fitness in Agrobacterium fabrum C58 around Atu3739
Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Linalool 5 mM |
---|---|---|---|---|---|
remove | |||||
819,407 | - | Atu3738 | 0.52 | -0.1 | |
819,409 | + | Atu3738 | 0.52 | +0.3 | |
819,417 | + | Atu3738 | 0.52 | +0.0 | |
819,442 | - | Atu3738 | 0.53 | +0.4 | |
819,507 | - | Atu3738 | 0.57 | +0.0 | |
819,581 | + | Atu3738 | 0.61 | -0.2 | |
819,581 | + | Atu3738 | 0.61 | +0.4 | |
819,708 | + | Atu3738 | 0.68 | +0.1 | |
819,729 | - | Atu3738 | 0.69 | +0.4 | |
819,733 | - | Atu3738 | 0.69 | +2.6 | |
819,746 | + | Atu3738 | 0.70 | -0.1 | |
819,851 | + | Atu3738 | 0.75 | -0.3 | |
819,859 | - | Atu3738 | 0.76 | -0.7 | |
819,972 | + | Atu3738 | 0.82 | -0.0 | |
819,979 | + | Atu3738 | 0.82 | +0.3 | |
819,980 | - | Atu3738 | 0.82 | +0.4 | |
819,989 | + | Atu3738 | 0.83 | +0.7 | |
820,016 | - | Atu3738 | 0.84 | +0.1 | |
820,018 | + | Atu3738 | 0.84 | -0.3 | |
820,063 | - | Atu3738 | 0.87 | +1.7 | |
820,084 | - | Atu3738 | 0.88 | -0.0 | |
820,144 | + | -0.2 | |||
820,202 | + | +0.2 | |||
820,225 | - | +0.2 | |||
820,242 | - | +0.2 | |||
820,278 | + | -1.0 | |||
820,278 | + | -0.3 | |||
820,345 | - | +0.1 | |||
820,345 | - | -0.2 | |||
820,368 | + | -0.7 | |||
821,072 | + | Atu3739 | 0.58 | -0.6 | |
821,450 | + | Atu3739 | 0.89 | -1.7 | |
821,721 | + | -0.1 | |||
821,790 | - | -0.4 | |||
821,823 | + | +0.0 | |||
821,824 | - | -0.6 | |||
821,993 | + | Atu3740 | 0.22 | -0.5 | |
822,024 | + | Atu3740 | 0.25 | -1.1 | |
822,029 | + | Atu3740 | 0.25 | +0.0 | |
822,029 | + | Atu3740 | 0.25 | -1.5 | |
822,081 | - | Atu3740 | 0.30 | -0.7 | |
822,088 | + | Atu3740 | 0.31 | +1.0 | |
822,267 | - | Atu3740 | 0.48 | -0.0 | |
822,278 | + | Atu3740 | 0.49 | -0.4 | |
822,370 | + | Atu3740 | 0.58 | +0.5 |
Or see this region's nucleotide sequence