Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3345 and Atu3346 overlap by 1 nucleotides Atu3346 and Atu3347 are separated by 143 nucleotides Atu3347 and Atu3348 are separated by 23 nucleotides Atu3348 and Atu3349 are separated by 56 nucleotides
Atu3345: Atu3345 - 6-pyruvoyl tetrahydrobiopterin synthase, at 379,335 to 379,691
Atu3345
Atu3346: Atu3346 - succinoglycan biosynthesis regulator, at 379,691 to 380,401
Atu3346
Atu3347: Atu3347 - hypothetical protein, at 380,545 to 381,678
Atu3347
Atu3348: Atu3348 - hypothetical protein, at 381,702 to 382,466
Atu3348
Atu3349: Atu3349 - ABC transporter permease, at 382,523 to 383,611
Atu3349
Position (kb) 380
381
382 Strain fitness (log2 ratio) -2
-1
0
1
2 at 379.595 kb on + strand, within Atu3345 at 379.639 kb on + strand, within Atu3345 at 379.710 kb on + strand at 379.710 kb on + strand at 379.710 kb on + strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.718 kb on - strand at 379.723 kb on - strand at 379.923 kb on - strand, within Atu3346 at 379.923 kb on - strand, within Atu3346 at 379.936 kb on + strand, within Atu3346 at 379.944 kb on - strand, within Atu3346 at 379.960 kb on - strand, within Atu3346 at 379.967 kb on + strand, within Atu3346 at 379.992 kb on + strand, within Atu3346 at 380.080 kb on + strand, within Atu3346 at 380.201 kb on - strand, within Atu3346 at 380.326 kb on - strand, within Atu3346 at 380.379 kb on + strand at 380.441 kb on + strand at 380.535 kb on + strand at 380.638 kb on + strand at 380.666 kb on - strand, within Atu3347 at 380.684 kb on + strand, within Atu3347 at 380.697 kb on - strand, within Atu3347 at 380.752 kb on - strand, within Atu3347 at 380.767 kb on + strand, within Atu3347 at 380.893 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.940 kb on + strand, within Atu3347 at 380.948 kb on - strand, within Atu3347 at 381.196 kb on - strand, within Atu3347 at 381.242 kb on - strand, within Atu3347 at 381.254 kb on + strand, within Atu3347 at 381.262 kb on - strand, within Atu3347 at 381.272 kb on - strand, within Atu3347 at 381.439 kb on - strand, within Atu3347 at 381.469 kb on + strand, within Atu3347 at 381.583 kb on - strand at 381.604 kb on - strand at 381.604 kb on - strand at 381.666 kb on + strand at 381.765 kb on - strand at 381.848 kb on + strand, within Atu3348 at 381.910 kb on + strand, within Atu3348 at 382.041 kb on - strand, within Atu3348 at 382.086 kb on + strand, within Atu3348 at 382.148 kb on + strand, within Atu3348 at 382.151 kb on - strand, within Atu3348 at 382.191 kb on - strand, within Atu3348 at 382.287 kb on + strand, within Atu3348 at 382.292 kb on + strand, within Atu3348 at 382.347 kb on + strand, within Atu3348 at 382.366 kb on + strand, within Atu3348 at 382.374 kb on - strand, within Atu3348 at 382.438 kb on + strand at 382.438 kb on + strand at 382.529 kb on - strand at 382.565 kb on + strand at 382.568 kb on - strand at 382.570 kb on + strand at 382.588 kb on + strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.640 kb on + strand, within Atu3349 at 382.659 kb on - strand, within Atu3349
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 379,595 + Atu3345 0.73 +0.9 379,639 + Atu3345 0.85 -0.1 379,710 + +0.5 379,710 + +1.3 379,710 + -0.1 379,718 - -0.2 379,718 - -0.3 379,718 - +0.0 379,723 - +0.3 379,923 - Atu3346 0.33 -0.1 379,923 - Atu3346 0.33 +0.0 379,936 + Atu3346 0.34 +0.5 379,944 - Atu3346 0.36 +0.2 379,960 - Atu3346 0.38 -0.2 379,967 + Atu3346 0.39 +0.7 379,992 + Atu3346 0.42 +2.1 380,080 + Atu3346 0.55 +0.9 380,201 - Atu3346 0.72 +0.4 380,326 - Atu3346 0.89 -0.1 380,379 + +0.3 380,441 + -0.3 380,535 + +0.2 380,638 + -0.1 380,666 - Atu3347 0.11 +2.3 380,684 + Atu3347 0.12 -0.5 380,697 - Atu3347 0.13 -0.1 380,752 - Atu3347 0.18 +1.1 380,767 + Atu3347 0.20 -0.0 380,893 + Atu3347 0.31 +1.3 380,940 + Atu3347 0.35 +1.9 380,940 + Atu3347 0.35 -0.7 380,948 - Atu3347 0.36 -0.0 381,196 - Atu3347 0.57 +0.3 381,242 - Atu3347 0.61 +1.2 381,254 + Atu3347 0.63 -0.4 381,262 - Atu3347 0.63 +0.4 381,272 - Atu3347 0.64 +0.1 381,439 - Atu3347 0.79 +0.4 381,469 + Atu3347 0.81 +0.0 381,583 - -0.6 381,604 - -0.0 381,604 - +0.2 381,666 + +0.3 381,765 - +0.4 381,848 + Atu3348 0.19 -0.2 381,910 + Atu3348 0.27 -0.2 382,041 - Atu3348 0.44 -1.4 382,086 + Atu3348 0.50 -0.0 382,148 + Atu3348 0.58 -0.3 382,151 - Atu3348 0.59 +0.2 382,191 - Atu3348 0.64 +0.0 382,287 + Atu3348 0.76 +0.5 382,292 + Atu3348 0.77 +0.3 382,347 + Atu3348 0.84 -1.2 382,366 + Atu3348 0.87 +0.4 382,374 - Atu3348 0.88 -2.4 382,438 + +0.3 382,438 + -0.3 382,529 - -0.6 382,565 + -0.9 382,568 - +0.3 382,570 + -1.0 382,588 + -0.5 382,596 - +0.1 382,596 - +0.3 382,596 - +0.5 382,640 + Atu3349 0.11 -0.4 382,659 - Atu3349 0.12 +0.1
Or see this region's nucleotide sequence