Strain Fitness in Agrobacterium fabrum C58 around Atu3202

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3200 and Atu3201 are separated by 193 nucleotidesAtu3201 and Atu3202 are separated by 129 nucleotidesAtu3202 and Atu3203 are separated by 12 nucleotides Atu3200: Atu3200 - ribose ABC transporter ATPase, at 208,965 to 210,488 Atu3200 Atu3201: Atu3201 - TetR family transcriptional regulator, at 210,682 to 211,305 Atu3201 Atu3202: Atu3202 - RND multidrug efflux transporter, at 211,435 to 214,569 Atu3202 Atu3203: Atu3203 - RND multidrug efflux membrane permease, at 214,582 to 215,796 Atu3203 Position (kb) 211 212 213 214 215Strain fitness (log2 ratio) -2 -1 0 1at 210.445 kb on + strandat 210.450 kb on + strandat 210.453 kb on - strandat 210.484 kb on + strandat 210.534 kb on + strandat 210.663 kb on - strandat 210.671 kb on - strandat 210.673 kb on - strandat 210.680 kb on + strandat 210.680 kb on + strandat 210.719 kb on + strandat 210.742 kb on - strandat 210.778 kb on + strand, within Atu3201at 210.778 kb on + strand, within Atu3201at 210.778 kb on + strand, within Atu3201at 210.786 kb on - strand, within Atu3201at 210.786 kb on - strand, within Atu3201at 210.786 kb on - strand, within Atu3201at 210.786 kb on - strand, within Atu3201at 210.792 kb on - strand, within Atu3201at 210.799 kb on - strand, within Atu3201at 210.854 kb on + strand, within Atu3201at 210.862 kb on - strand, within Atu3201at 210.881 kb on + strand, within Atu3201at 210.893 kb on + strand, within Atu3201at 210.907 kb on + strand, within Atu3201at 211.048 kb on - strand, within Atu3201at 211.058 kb on - strand, within Atu3201at 211.076 kb on - strand, within Atu3201at 211.297 kb on - strandat 211.302 kb on - strandat 211.304 kb on + strandat 211.469 kb on + strandat 211.889 kb on - strand, within Atu3202at 211.896 kb on + strand, within Atu3202at 212.004 kb on + strand, within Atu3202at 212.098 kb on - strand, within Atu3202at 212.243 kb on + strand, within Atu3202at 212.330 kb on - strand, within Atu3202at 212.410 kb on - strand, within Atu3202at 212.459 kb on - strand, within Atu3202at 212.527 kb on + strand, within Atu3202at 212.527 kb on + strand, within Atu3202at 212.527 kb on + strand, within Atu3202at 212.535 kb on - strand, within Atu3202at 212.615 kb on + strand, within Atu3202at 212.615 kb on + strand, within Atu3202at 212.622 kb on - strand, within Atu3202at 212.623 kb on - strand, within Atu3202at 212.623 kb on - strand, within Atu3202at 212.623 kb on - strand, within Atu3202at 212.627 kb on + strand, within Atu3202at 212.650 kb on - strand, within Atu3202at 212.659 kb on + strand, within Atu3202at 212.659 kb on + strand, within Atu3202at 212.683 kb on + strand, within Atu3202at 212.833 kb on - strand, within Atu3202at 212.852 kb on - strand, within Atu3202at 212.982 kb on + strand, within Atu3202at 212.985 kb on + strand, within Atu3202at 213.263 kb on + strand, within Atu3202at 213.265 kb on - strand, within Atu3202at 213.285 kb on + strand, within Atu3202at 213.303 kb on + strand, within Atu3202at 213.308 kb on + strand, within Atu3202at 213.377 kb on + strand, within Atu3202at 213.394 kb on - strand, within Atu3202at 213.442 kb on - strand, within Atu3202at 213.444 kb on - strand, within Atu3202at 213.452 kb on + strand, within Atu3202at 213.492 kb on + strand, within Atu3202at 213.526 kb on - strand, within Atu3202at 213.538 kb on - strand, within Atu3202at 213.548 kb on - strand, within Atu3202at 213.613 kb on - strand, within Atu3202at 213.850 kb on - strand, within Atu3202at 213.938 kb on - strand, within Atu3202at 213.945 kb on + strand, within Atu3202at 213.966 kb on + strand, within Atu3202at 214.024 kb on + strand, within Atu3202at 214.029 kb on + strand, within Atu3202at 214.044 kb on - strand, within Atu3202at 214.049 kb on - strand, within Atu3202at 214.094 kb on - strand, within Atu3202at 214.094 kb on - strand, within Atu3202at 214.112 kb on - strand, within Atu3202at 214.124 kb on + strand, within Atu3202at 214.124 kb on + strand, within Atu3202at 214.134 kb on + strand, within Atu3202at 214.149 kb on - strand, within Atu3202at 214.182 kb on - strand, within Atu3202at 214.192 kb on + strand, within Atu3202at 214.203 kb on + strand, within Atu3202at 214.251 kb on - strand, within Atu3202at 214.258 kb on - strandat 214.283 kb on + strandat 214.368 kb on - strandat 214.418 kb on + strandat 214.425 kb on + strandat 214.490 kb on - strandat 214.513 kb on + strandat 214.580 kb on + strandat 214.631 kb on - strandat 214.633 kb on - strandat 214.682 kb on + strandat 214.711 kb on + strand, within Atu3203at 214.751 kb on - strand, within Atu3203at 214.798 kb on - strand, within Atu3203at 214.816 kb on + strand, within Atu3203at 214.846 kb on - strand, within Atu3203at 215.013 kb on + strand, within Atu3203at 215.043 kb on + strand, within Atu3203at 215.081 kb on + strand, within Atu3203at 215.083 kb on - strand, within Atu3203at 215.104 kb on - strand, within Atu3203at 215.142 kb on - strand, within Atu3203at 215.152 kb on - strand, within Atu3203at 215.274 kb on - strand, within Atu3203at 215.292 kb on - strand, within Atu3203at 215.303 kb on - strand, within Atu3203at 215.425 kb on + strand, within Atu3203at 215.460 kb on + strand, within Atu3203at 215.488 kb on + strand, within Atu3203

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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210,445 + -0.0
210,450 + +0.2
210,453 - +0.1
210,484 + +0.1
210,534 + -1.4
210,663 - +0.7
210,671 - +0.0
210,673 - +0.9
210,680 + -0.2
210,680 + +0.1
210,719 + +0.9
210,742 - +0.3
210,778 + Atu3201 0.15 +0.0
210,778 + Atu3201 0.15 +0.1
210,778 + Atu3201 0.15 +0.4
210,786 - Atu3201 0.17 +0.1
210,786 - Atu3201 0.17 -1.7
210,786 - Atu3201 0.17 +0.4
210,786 - Atu3201 0.17 -0.3
210,792 - Atu3201 0.18 +1.1
210,799 - Atu3201 0.19 +1.5
210,854 + Atu3201 0.28 -0.6
210,862 - Atu3201 0.29 +0.3
210,881 + Atu3201 0.32 +0.0
210,893 + Atu3201 0.34 -2.1
210,907 + Atu3201 0.36 -0.3
211,048 - Atu3201 0.59 +0.2
211,058 - Atu3201 0.60 +0.3
211,076 - Atu3201 0.63 +0.6
211,297 - +0.3
211,302 - +0.3
211,304 + +0.1
211,469 + -0.9
211,889 - Atu3202 0.14 -1.6
211,896 + Atu3202 0.15 -0.4
212,004 + Atu3202 0.18 -0.9
212,098 - Atu3202 0.21 +1.5
212,243 + Atu3202 0.26 -1.7
212,330 - Atu3202 0.29 -1.8
212,410 - Atu3202 0.31 -0.6
212,459 - Atu3202 0.33 +1.2
212,527 + Atu3202 0.35 -1.2
212,527 + Atu3202 0.35 -1.1
212,527 + Atu3202 0.35 -2.0
212,535 - Atu3202 0.35 -0.4
212,615 + Atu3202 0.38 -1.2
212,615 + Atu3202 0.38 -1.0
212,622 - Atu3202 0.38 -0.6
212,623 - Atu3202 0.38 -0.4
212,623 - Atu3202 0.38 -1.1
212,623 - Atu3202 0.38 -2.2
212,627 + Atu3202 0.38 -0.9
212,650 - Atu3202 0.39 -0.5
212,659 + Atu3202 0.39 -1.1
212,659 + Atu3202 0.39 -0.2
212,683 + Atu3202 0.40 -0.1
212,833 - Atu3202 0.45 -0.5
212,852 - Atu3202 0.45 -1.1
212,982 + Atu3202 0.49 -2.3
212,985 + Atu3202 0.49 -0.9
213,263 + Atu3202 0.58 -0.5
213,265 - Atu3202 0.58 -0.6
213,285 + Atu3202 0.59 +0.2
213,303 + Atu3202 0.60 -0.4
213,308 + Atu3202 0.60 -2.0
213,377 + Atu3202 0.62 -0.5
213,394 - Atu3202 0.62 -1.4
213,442 - Atu3202 0.64 -0.7
213,444 - Atu3202 0.64 -1.1
213,452 + Atu3202 0.64 -0.9
213,492 + Atu3202 0.66 -1.0
213,526 - Atu3202 0.67 -0.6
213,538 - Atu3202 0.67 -1.3
213,548 - Atu3202 0.67 -1.5
213,613 - Atu3202 0.69 -0.8
213,850 - Atu3202 0.77 -1.0
213,938 - Atu3202 0.80 -1.4
213,945 + Atu3202 0.80 -0.6
213,966 + Atu3202 0.81 -0.8
214,024 + Atu3202 0.83 -0.7
214,029 + Atu3202 0.83 -0.3
214,044 - Atu3202 0.83 -0.6
214,049 - Atu3202 0.83 -1.4
214,094 - Atu3202 0.85 -1.1
214,094 - Atu3202 0.85 -0.2
214,112 - Atu3202 0.85 +0.0
214,124 + Atu3202 0.86 -0.1
214,124 + Atu3202 0.86 -1.3
214,134 + Atu3202 0.86 -0.4
214,149 - Atu3202 0.87 -1.6
214,182 - Atu3202 0.88 -1.2
214,192 + Atu3202 0.88 -1.0
214,203 + Atu3202 0.88 -1.0
214,251 - Atu3202 0.90 -0.3
214,258 - -0.7
214,283 + -0.8
214,368 - -0.3
214,418 + -2.3
214,425 + -1.4
214,490 - -1.4
214,513 + -0.8
214,580 + -0.6
214,631 - -0.6
214,633 - -0.4
214,682 + -0.6
214,711 + Atu3203 0.11 -0.2
214,751 - Atu3203 0.14 -0.5
214,798 - Atu3203 0.18 -2.3
214,816 + Atu3203 0.19 -2.1
214,846 - Atu3203 0.22 -0.4
215,013 + Atu3203 0.35 -0.5
215,043 + Atu3203 0.38 -0.5
215,081 + Atu3203 0.41 -0.8
215,083 - Atu3203 0.41 -0.8
215,104 - Atu3203 0.43 -0.3
215,142 - Atu3203 0.46 -0.8
215,152 - Atu3203 0.47 -1.6
215,274 - Atu3203 0.57 -1.2
215,292 - Atu3203 0.58 -1.0
215,303 - Atu3203 0.59 -0.8
215,425 + Atu3203 0.69 -1.4
215,460 + Atu3203 0.72 -1.1
215,488 + Atu3203 0.75 -0.3

Or see this region's nucleotide sequence