Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3016 and Atu3017 overlap by 4 nucleotides Atu3017 and Atu3018 are separated by 70 nucleotides Atu3018 and Atu3019 are separated by 70 nucleotides Atu3019 and Atu3020 are separated by 431 nucleotides
Atu3016: Atu3016 - phosphoglyceromutase, at 10,589 to 10,888
Atu3016
Atu3017: Atu3017 - phosphoglyceromutase, at 10,885 to 11,178
Atu3017
Atu3018: Atu3018 - hypothetical protein, at 11,249 to 11,632
Atu3018
Atu3019: Atu3019 - hypothetical protein, at 11,703 to 12,239
Atu3019
Atu3020: Atu3020 - GntR family transcriptional regulator, at 12,671 to 13,381
Atu3020
Position (kb)
11
12
13 Strain fitness (log2 ratio)
-1
0
1 at 10.774 kb on + strand, within Atu3016 at 10.787 kb on - strand, within Atu3016 at 10.794 kb on + strand, within Atu3016 at 10.800 kb on + strand, within Atu3016 at 10.862 kb on - strand at 11.146 kb on + strand, within Atu3017 at 11.166 kb on + strand at 11.166 kb on + strand at 11.178 kb on + strand at 11.241 kb on - strand at 11.289 kb on + strand, within Atu3018 at 11.303 kb on + strand, within Atu3018 at 11.303 kb on + strand, within Atu3018 at 11.314 kb on + strand, within Atu3018 at 11.332 kb on + strand, within Atu3018 at 11.398 kb on - strand, within Atu3018 at 11.539 kb on - strand, within Atu3018 at 11.584 kb on + strand, within Atu3018 at 11.594 kb on + strand at 11.602 kb on - strand at 11.613 kb on - strand at 11.773 kb on + strand, within Atu3019 at 11.818 kb on + strand, within Atu3019 at 11.887 kb on + strand, within Atu3019 at 11.887 kb on + strand, within Atu3019 at 11.890 kb on + strand, within Atu3019 at 11.895 kb on - strand, within Atu3019 at 11.934 kb on + strand, within Atu3019 at 11.936 kb on + strand, within Atu3019 at 11.942 kb on - strand, within Atu3019 at 11.978 kb on + strand, within Atu3019 at 11.986 kb on - strand, within Atu3019 at 12.044 kb on - strand, within Atu3019 at 12.112 kb on - strand, within Atu3019 at 12.142 kb on + strand, within Atu3019 at 12.223 kb on - strand at 12.237 kb on - strand at 12.294 kb on + strand at 12.358 kb on - strand at 12.380 kb on - strand at 12.392 kb on + strand at 12.397 kb on + strand at 12.476 kb on + strand at 12.483 kb on + strand at 12.483 kb on + strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.497 kb on + strand at 12.785 kb on + strand, within Atu3020 at 12.815 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.984 kb on + strand, within Atu3020 at 13.103 kb on + strand, within Atu3020
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 10,774 + Atu3016 0.62 -0.9 10,787 - Atu3016 0.66 -0.7 10,794 + Atu3016 0.68 -0.4 10,800 + Atu3016 0.70 -0.9 10,862 - +0.1 11,146 + Atu3017 0.89 +0.0 11,166 + -1.0 11,166 + -0.2 11,178 + -0.2 11,241 - -0.4 11,289 + Atu3018 0.10 -0.3 11,303 + Atu3018 0.14 -0.9 11,303 + Atu3018 0.14 +0.0 11,314 + Atu3018 0.17 -0.2 11,332 + Atu3018 0.22 -0.5 11,398 - Atu3018 0.39 -1.0 11,539 - Atu3018 0.76 -0.6 11,584 + Atu3018 0.87 +0.8 11,594 + -0.7 11,602 - -0.6 11,613 - -1.4 11,773 + Atu3019 0.13 -0.8 11,818 + Atu3019 0.21 -0.3 11,887 + Atu3019 0.34 +0.2 11,887 + Atu3019 0.34 +0.0 11,890 + Atu3019 0.35 -0.4 11,895 - Atu3019 0.36 -0.2 11,934 + Atu3019 0.43 -0.5 11,936 + Atu3019 0.43 -0.2 11,942 - Atu3019 0.45 -1.4 11,978 + Atu3019 0.51 +0.8 11,986 - Atu3019 0.53 -1.3 12,044 - Atu3019 0.64 -0.5 12,112 - Atu3019 0.76 -0.5 12,142 + Atu3019 0.82 -1.0 12,223 - -0.7 12,237 - +0.2 12,294 + -0.6 12,358 - -0.3 12,380 - -0.4 12,392 + +0.2 12,397 + +0.4 12,476 + -0.9 12,483 + -0.9 12,483 + +0.8 12,491 - +0.4 12,491 - +0.1 12,491 - -0.4 12,497 + -0.6 12,785 + Atu3020 0.16 -0.4 12,815 + Atu3020 0.20 +0.1 12,970 + Atu3020 0.42 -0.9 12,970 + Atu3020 0.42 -0.4 12,970 + Atu3020 0.42 -0.6 12,970 + Atu3020 0.42 +0.5 12,970 + Atu3020 0.42 -0.8 12,970 + Atu3020 0.42 +0.3 12,984 + Atu3020 0.44 -1.5 13,103 + Atu3020 0.61 -0.8
Or see this region's nucleotide sequence