Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3013 and Atu3014 overlap by 4 nucleotides Atu3014 and Atu3015 are separated by 393 nucleotides Atu3015 and Atu3016 are separated by 39 nucleotides Atu3016 and Atu3017 overlap by 4 nucleotides Atu3017 and Atu3018 are separated by 70 nucleotides
Atu3013: Atu3013 - hypothetical protein, at 8,940 to 9,344
Atu3013
Atu3014: Atu3014 - hypothetical protein, at 9,341 to 9,604
Atu3014
Atu3015: Atu3015 - hypothetical protein, at 9,998 to 10,549
Atu3015
Atu3016: Atu3016 - phosphoglyceromutase, at 10,589 to 10,888
Atu3016
Atu3017: Atu3017 - phosphoglyceromutase, at 10,885 to 11,178
Atu3017
Atu3018: Atu3018 - hypothetical protein, at 11,249 to 11,632
Atu3018
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-2
-1
0
1 at 9.018 kb on + strand, within Atu3013 at 9.102 kb on + strand, within Atu3013 at 9.125 kb on - strand, within Atu3013 at 9.147 kb on + strand, within Atu3013 at 9.195 kb on + strand, within Atu3013 at 9.258 kb on - strand, within Atu3013 at 9.331 kb on - strand at 9.363 kb on + strand at 9.457 kb on - strand, within Atu3014 at 9.509 kb on - strand, within Atu3014 at 9.695 kb on - strand at 9.732 kb on + strand at 9.768 kb on - strand at 9.927 kb on + strand at 9.959 kb on - strand at 10.079 kb on + strand, within Atu3015 at 10.090 kb on + strand, within Atu3015 at 10.101 kb on + strand, within Atu3015 at 10.130 kb on - strand, within Atu3015 at 10.135 kb on - strand, within Atu3015 at 10.296 kb on + strand, within Atu3015 at 10.318 kb on + strand, within Atu3015 at 10.323 kb on + strand, within Atu3015 at 10.326 kb on - strand, within Atu3015 at 10.355 kb on + strand, within Atu3015 at 10.403 kb on - strand, within Atu3015 at 10.443 kb on + strand, within Atu3015 at 10.445 kb on + strand, within Atu3015 at 10.602 kb on + strand at 10.611 kb on + strand at 10.631 kb on + strand, within Atu3016 at 10.649 kb on - strand, within Atu3016 at 10.682 kb on - strand, within Atu3016 at 10.689 kb on + strand, within Atu3016 at 10.697 kb on - strand, within Atu3016 at 10.774 kb on + strand, within Atu3016 at 10.787 kb on - strand, within Atu3016 at 10.794 kb on + strand, within Atu3016 at 10.800 kb on + strand, within Atu3016 at 10.862 kb on - strand at 11.146 kb on + strand, within Atu3017 at 11.166 kb on + strand at 11.166 kb on + strand at 11.178 kb on + strand at 11.241 kb on - strand at 11.289 kb on + strand, within Atu3018 at 11.303 kb on + strand, within Atu3018 at 11.303 kb on + strand, within Atu3018 at 11.314 kb on + strand, within Atu3018 at 11.332 kb on + strand, within Atu3018 at 11.398 kb on - strand, within Atu3018 at 11.539 kb on - strand, within Atu3018
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 9,018 + Atu3013 0.19 -1.4 9,102 + Atu3013 0.40 -1.9 9,125 - Atu3013 0.46 +0.1 9,147 + Atu3013 0.51 -1.3 9,195 + Atu3013 0.63 -0.9 9,258 - Atu3013 0.79 +0.6 9,331 - -0.8 9,363 + -0.4 9,457 - Atu3014 0.44 -0.1 9,509 - Atu3014 0.64 -0.3 9,695 - -0.6 9,732 + -0.3 9,768 - +0.4 9,927 + -0.7 9,959 - -0.6 10,079 + Atu3015 0.15 +1.6 10,090 + Atu3015 0.17 -0.8 10,101 + Atu3015 0.19 -0.4 10,130 - Atu3015 0.24 -1.3 10,135 - Atu3015 0.25 -0.9 10,296 + Atu3015 0.54 -1.6 10,318 + Atu3015 0.58 -1.0 10,323 + Atu3015 0.59 -0.4 10,326 - Atu3015 0.59 -0.2 10,355 + Atu3015 0.65 -0.5 10,403 - Atu3015 0.73 +1.2 10,443 + Atu3015 0.81 -0.4 10,445 + Atu3015 0.81 +0.3 10,602 + -0.4 10,611 + -1.1 10,631 + Atu3016 0.14 -0.0 10,649 - Atu3016 0.20 -0.4 10,682 - Atu3016 0.31 -0.8 10,689 + Atu3016 0.33 -0.7 10,697 - Atu3016 0.36 -1.4 10,774 + Atu3016 0.62 -0.9 10,787 - Atu3016 0.66 -0.7 10,794 + Atu3016 0.68 -0.4 10,800 + Atu3016 0.70 -0.9 10,862 - +0.1 11,146 + Atu3017 0.89 +0.0 11,166 + -1.0 11,166 + -0.2 11,178 + -0.2 11,241 - -0.4 11,289 + Atu3018 0.10 -0.3 11,303 + Atu3018 0.14 -0.9 11,303 + Atu3018 0.14 +0.0 11,314 + Atu3018 0.17 -0.2 11,332 + Atu3018 0.22 -0.5 11,398 - Atu3018 0.39 -1.0 11,539 - Atu3018 0.76 -0.6
Or see this region's nucleotide sequence