Strain Fitness in Agrobacterium fabrum C58 around Atu1447

Experiment: Linalool 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu1446 and Atu1447 are separated by 148 nucleotidesAtu1447 and Atu1448 overlap by 11 nucleotides Atu1446: Atu1446 - two component response regulator, at 1,439,299 to 1,440,750 Atu1446 Atu1447: Atu1447 - two component sensor kinase, at 1,440,899 to 1,443,160 Atu1447 Atu1448: Atu1448 - two component response regulator, at 1,443,150 to 1,444,514 Atu1448 Position (kb) 1440 1441 1442 1443 1444Strain fitness (log2 ratio) -2 -1 0 1at 1440.104 kb on + strand, within Atu1446at 1440.337 kb on + strand, within Atu1446at 1440.659 kb on - strandat 1440.734 kb on + strandat 1440.852 kb on - strandat 1440.855 kb on + strandat 1440.863 kb on - strandat 1441.684 kb on + strand, within Atu1447at 1441.684 kb on + strand, within Atu1447at 1442.554 kb on + strand, within Atu1447at 1442.579 kb on + strand, within Atu1447at 1442.974 kb on + strandat 1442.988 kb on + strandat 1443.026 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
remove
1,440,104 + Atu1446 0.55 -0.0
1,440,337 + Atu1446 0.71 +0.3
1,440,659 - -1.9
1,440,734 + -0.3
1,440,852 - -1.4
1,440,855 + -0.4
1,440,863 - -1.5
1,441,684 + Atu1447 0.35 -0.2
1,441,684 + Atu1447 0.35 +0.7
1,442,554 + Atu1447 0.73 -1.1
1,442,579 + Atu1447 0.74 -2.3
1,442,974 + +1.2
1,442,988 + +1.2
1,443,026 + -0.3

Or see this region's nucleotide sequence