Strain Fitness in Agrobacterium fabrum C58 around Atu1141

Experiment: Linalool 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1139 and Atu1140 are separated by 134 nucleotidesAtu1140 and Atu1141 are separated by 65 nucleotidesAtu1141 and Atu1142 are separated by 283 nucleotides Atu1139: Atu1139 - hypothetical protein, at 1,128,351 to 1,128,821 Atu1139 Atu1140: Atu1140 - phosphoribosyalaminoimidazole-succinocarboxamide synthase, at 1,128,956 to 1,129,561 Atu1140 Atu1141: Atu1141 - Phosphoribosylglycinamide synthetase, at 1,129,627 to 1,130,700 Atu1141 Atu1142: Atu1142 - permease, at 1,130,984 to 1,132,141 Atu1142 Position (kb) 1129 1130 1131Strain fitness (log2 ratio) -1 0 1at 1128.629 kb on - strand, within Atu1139at 1128.636 kb on - strand, within Atu1139at 1128.698 kb on + strand, within Atu1139at 1128.705 kb on - strand, within Atu1139at 1128.741 kb on + strand, within Atu1139at 1128.772 kb on + strand, within Atu1139at 1128.777 kb on + strandat 1128.777 kb on + strandat 1128.782 kb on - strandat 1128.845 kb on + strandat 1128.853 kb on - strandat 1129.076 kb on - strand, within Atu1140at 1129.117 kb on - strand, within Atu1140at 1129.144 kb on + strand, within Atu1140at 1129.240 kb on - strand, within Atu1140at 1129.550 kb on - strandat 1129.550 kb on - strandat 1129.605 kb on - strandat 1129.640 kb on - strandat 1129.738 kb on - strand, within Atu1141at 1130.043 kb on - strand, within Atu1141at 1130.114 kb on + strand, within Atu1141at 1130.114 kb on + strand, within Atu1141at 1130.214 kb on - strand, within Atu1141at 1130.396 kb on - strand, within Atu1141at 1130.465 kb on - strand, within Atu1141at 1130.514 kb on + strand, within Atu1141at 1130.744 kb on + strandat 1130.828 kb on + strandat 1130.828 kb on + strandat 1130.836 kb on - strandat 1130.888 kb on + strandat 1130.901 kb on + strandat 1130.909 kb on + strandat 1130.917 kb on - strandat 1130.920 kb on + strandat 1130.927 kb on + strandat 1130.943 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Linalool 5 mM
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1,128,629 - Atu1139 0.59 +0.7
1,128,636 - Atu1139 0.61 +1.1
1,128,698 + Atu1139 0.74 -0.4
1,128,705 - Atu1139 0.75 -0.7
1,128,741 + Atu1139 0.83 +0.2
1,128,772 + Atu1139 0.89 +1.4
1,128,777 + -0.6
1,128,777 + +1.4
1,128,782 - -0.0
1,128,845 + -0.3
1,128,853 - +0.2
1,129,076 - Atu1140 0.20 -0.8
1,129,117 - Atu1140 0.27 -0.5
1,129,144 + Atu1140 0.31 -0.5
1,129,240 - Atu1140 0.47 -0.8
1,129,550 - -0.4
1,129,550 - -0.9
1,129,605 - -0.5
1,129,640 - +0.2
1,129,738 - Atu1141 0.10 -1.1
1,130,043 - Atu1141 0.39 -0.4
1,130,114 + Atu1141 0.45 -0.6
1,130,114 + Atu1141 0.45 -0.6
1,130,214 - Atu1141 0.55 -0.6
1,130,396 - Atu1141 0.72 -0.6
1,130,465 - Atu1141 0.78 -0.2
1,130,514 + Atu1141 0.83 -0.4
1,130,744 + -0.3
1,130,828 + +0.3
1,130,828 + +0.3
1,130,836 - -1.0
1,130,888 + -0.2
1,130,901 + +0.9
1,130,909 + -0.3
1,130,917 - +0.0
1,130,920 + -0.5
1,130,927 + +1.7
1,130,943 + -0.1

Or see this region's nucleotide sequence