Experiment: Linalool 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0161 and Atu0162 are separated by 6 nucleotides Atu0162 and Atu0163 overlap by 4 nucleotides Atu0163 and Atu0164 are separated by 142 nucleotides
Atu0161: Atu0161 - biopolymer transport protein, at 166,742 to 167,764
Atu0161
Atu0162: Atu0162 - biopolymer transport protein, at 167,771 to 168,274
Atu0162
Atu0163: Atu0163 - tonB protein, at 168,271 to 169,194
Atu0163
Atu0164: Atu0164 - putative malate dehydrogenase, at 169,337 to 170,326
Atu0164
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1
2 at 167.346 kb on + strand, within Atu0161 at 167.346 kb on + strand, within Atu0161 at 167.354 kb on - strand, within Atu0161 at 167.380 kb on + strand, within Atu0161 at 167.464 kb on + strand, within Atu0161 at 167.474 kb on + strand, within Atu0161 at 167.482 kb on - strand, within Atu0161 at 167.618 kb on + strand, within Atu0161 at 167.626 kb on - strand, within Atu0161 at 167.663 kb on + strand at 167.837 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.038 kb on + strand, within Atu0162 at 168.126 kb on + strand, within Atu0162 at 168.204 kb on - strand, within Atu0162 at 168.236 kb on - strand at 168.256 kb on + strand at 168.256 kb on + strand at 168.261 kb on + strand at 168.262 kb on - strand at 168.322 kb on + strand at 168.348 kb on - strand at 168.420 kb on + strand, within Atu0163 at 168.489 kb on + strand, within Atu0163 at 168.497 kb on - strand, within Atu0163 at 168.562 kb on + strand, within Atu0163 at 168.600 kb on + strand, within Atu0163 at 168.729 kb on + strand, within Atu0163 at 168.796 kb on - strand, within Atu0163 at 168.864 kb on + strand, within Atu0163 at 168.872 kb on - strand, within Atu0163 at 168.936 kb on + strand, within Atu0163 at 168.944 kb on - strand, within Atu0163 at 169.193 kb on - strand at 169.216 kb on + strand at 169.234 kb on + strand at 169.271 kb on + strand at 169.279 kb on - strand at 169.306 kb on - strand at 169.477 kb on - strand, within Atu0164 at 169.575 kb on + strand, within Atu0164 at 169.658 kb on - strand, within Atu0164 at 169.721 kb on + strand, within Atu0164 at 169.808 kb on + strand, within Atu0164 at 169.856 kb on + strand, within Atu0164 at 169.867 kb on + strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.875 kb on - strand, within Atu0164 at 169.903 kb on + strand, within Atu0164 at 169.909 kb on + strand, within Atu0164 at 169.917 kb on - strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.965 kb on + strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.973 kb on - strand, within Atu0164 at 169.978 kb on - strand, within Atu0164 at 170.008 kb on + strand, within Atu0164 at 170.016 kb on + strand, within Atu0164 at 170.054 kb on - strand, within Atu0164 at 170.109 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164 at 170.129 kb on - strand, within Atu0164
Per-strain Table
Position Strand Gene LocusTag Fraction Linalool 5 mM remove 167,346 + Atu0161 0.59 +0.8 167,346 + Atu0161 0.59 -0.2 167,354 - Atu0161 0.60 -0.5 167,380 + Atu0161 0.62 -0.2 167,464 + Atu0161 0.71 +0.4 167,474 + Atu0161 0.72 -0.4 167,482 - Atu0161 0.72 -0.3 167,618 + Atu0161 0.86 +0.1 167,626 - Atu0161 0.86 +0.4 167,663 + -0.3 167,837 + Atu0162 0.13 +0.1 168,038 + Atu0162 0.53 -0.1 168,038 + Atu0162 0.53 +0.1 168,126 + Atu0162 0.70 +0.7 168,204 - Atu0162 0.86 -1.3 168,236 - +0.4 168,256 + -0.2 168,256 + +0.2 168,261 + +0.1 168,262 - +0.2 168,322 + +0.9 168,348 - +0.5 168,420 + Atu0163 0.16 +0.8 168,489 + Atu0163 0.24 +0.6 168,497 - Atu0163 0.24 +0.5 168,562 + Atu0163 0.31 +0.2 168,600 + Atu0163 0.36 -0.3 168,729 + Atu0163 0.50 +0.2 168,796 - Atu0163 0.57 +0.8 168,864 + Atu0163 0.64 +1.0 168,872 - Atu0163 0.65 +0.3 168,936 + Atu0163 0.72 +0.1 168,944 - Atu0163 0.73 -0.5 169,193 - +1.3 169,216 + -0.5 169,234 + -0.0 169,271 + -0.3 169,279 - +0.1 169,306 - +0.1 169,477 - Atu0164 0.14 -0.1 169,575 + Atu0164 0.24 -0.8 169,658 - Atu0164 0.32 +0.2 169,721 + Atu0164 0.39 -0.3 169,808 + Atu0164 0.48 +0.2 169,856 + Atu0164 0.52 +0.7 169,867 + Atu0164 0.54 -0.0 169,875 - Atu0164 0.54 -0.4 169,875 - Atu0164 0.54 -0.1 169,875 - Atu0164 0.54 +0.0 169,903 + Atu0164 0.57 +0.2 169,909 + Atu0164 0.58 +0.1 169,917 - Atu0164 0.59 +0.5 169,965 + Atu0164 0.63 +0.3 169,965 + Atu0164 0.63 -0.1 169,973 - Atu0164 0.64 +2.2 169,973 - Atu0164 0.64 +0.1 169,973 - Atu0164 0.64 +0.7 169,973 - Atu0164 0.64 -0.4 169,978 - Atu0164 0.65 -0.8 170,008 + Atu0164 0.68 +0.3 170,016 + Atu0164 0.69 -0.0 170,054 - Atu0164 0.72 +0.3 170,109 - Atu0164 0.78 +0.9 170,129 - Atu0164 0.80 +0.1 170,129 - Atu0164 0.80 +0.4
Or see this region's nucleotide sequence