Experiment: Nerol 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5466 and Atu5467 are separated by 255 nucleotides Atu5467 and Atu5468 overlap by 21 nucleotides Atu5468 and Atu5469 are separated by 89 nucleotides
Atu5466: Atu5466 - potassium uptake protein, at 459,194 to 461,107
Atu5466
Atu5467: Atu5467 - hypothetical protein, at 461,363 to 461,674
Atu5467
Atu5468: Atu5468 - hypothetical protein, at 461,654 to 461,851
Atu5468
Atu5469: Atu5469 - DNA polymerase IV, at 461,941 to 463,014
Atu5469
Position (kb) 461
462 Strain fitness (log2 ratio) -1
0
1
2
3 at 460.684 kb on + strand, within Atu5466 at 460.702 kb on - strand, within Atu5466 at 460.834 kb on - strand, within Atu5466 at 460.839 kb on - strand, within Atu5466 at 460.943 kb on + strand at 460.948 kb on - strand at 461.021 kb on + strand at 461.073 kb on - strand at 461.086 kb on - strand at 461.103 kb on + strand at 461.159 kb on + strand at 461.239 kb on - strand at 461.264 kb on + strand at 461.267 kb on + strand at 461.285 kb on - strand at 461.300 kb on - strand at 461.428 kb on + strand, within Atu5467 at 461.435 kb on + strand, within Atu5467 at 461.453 kb on - strand, within Atu5467 at 461.493 kb on - strand, within Atu5467 at 461.544 kb on - strand, within Atu5467 at 461.634 kb on + strand, within Atu5467 at 461.671 kb on - strand at 461.736 kb on - strand, within Atu5468 at 461.736 kb on - strand, within Atu5468 at 461.780 kb on + strand, within Atu5468 at 461.851 kb on + strand at 461.933 kb on + strand at 461.963 kb on + strand at 462.002 kb on + strand at 462.010 kb on - strand at 462.072 kb on + strand, within Atu5469 at 462.171 kb on + strand, within Atu5469 at 462.178 kb on + strand, within Atu5469 at 462.186 kb on - strand, within Atu5469 at 462.249 kb on + strand, within Atu5469 at 462.252 kb on - strand, within Atu5469 at 462.257 kb on - strand, within Atu5469 at 462.389 kb on - strand, within Atu5469 at 462.567 kb on - strand, within Atu5469 at 462.628 kb on - strand, within Atu5469 at 462.631 kb on + strand, within Atu5469 at 462.681 kb on + strand, within Atu5469 at 462.684 kb on - strand, within Atu5469 at 462.686 kb on - strand, within Atu5469 at 462.701 kb on + strand, within Atu5469 at 462.718 kb on + strand, within Atu5469 at 462.771 kb on - strand, within Atu5469 at 462.811 kb on + strand, within Atu5469 at 462.822 kb on + strand, within Atu5469 at 462.837 kb on + strand, within Atu5469
Per-strain Table
Position Strand Gene LocusTag Fraction Nerol 1.25 mM remove 460,684 + Atu5466 0.78 -1.0 460,702 - Atu5466 0.79 +0.5 460,834 - Atu5466 0.86 +0.4 460,839 - Atu5466 0.86 -0.4 460,943 + +0.1 460,948 - +0.2 461,021 + -0.0 461,073 - -0.8 461,086 - +0.7 461,103 + +0.0 461,159 + +0.4 461,239 - -0.6 461,264 + +0.1 461,267 + -0.7 461,285 - +1.2 461,300 - +0.7 461,428 + Atu5467 0.21 +0.4 461,435 + Atu5467 0.23 -0.1 461,453 - Atu5467 0.29 -0.9 461,493 - Atu5467 0.42 -0.7 461,544 - Atu5467 0.58 -0.9 461,634 + Atu5467 0.87 +0.2 461,671 - -0.2 461,736 - Atu5468 0.41 +2.8 461,736 - Atu5468 0.41 -0.0 461,780 + Atu5468 0.64 +1.2 461,851 + +0.2 461,933 + -1.6 461,963 + -0.3 462,002 + -0.3 462,010 - +1.3 462,072 + Atu5469 0.12 +0.1 462,171 + Atu5469 0.21 -0.1 462,178 + Atu5469 0.22 -0.4 462,186 - Atu5469 0.23 -0.4 462,249 + Atu5469 0.29 +0.4 462,252 - Atu5469 0.29 -0.7 462,257 - Atu5469 0.29 -0.4 462,389 - Atu5469 0.42 -0.3 462,567 - Atu5469 0.58 -0.5 462,628 - Atu5469 0.64 -0.1 462,631 + Atu5469 0.64 +0.0 462,681 + Atu5469 0.69 -0.0 462,684 - Atu5469 0.69 -1.0 462,686 - Atu5469 0.69 +1.0 462,701 + Atu5469 0.71 -0.1 462,718 + Atu5469 0.72 -0.2 462,771 - Atu5469 0.77 +0.3 462,811 + Atu5469 0.81 +0.7 462,822 + Atu5469 0.82 -0.4 462,837 + Atu5469 0.83 +0.3
Or see this region's nucleotide sequence