Strain Fitness in Agrobacterium fabrum C58 around Atu3796

Experiment: Nerol 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3795 and Atu3796 overlap by 4 nucleotidesAtu3796 and Atu3797 overlap by 1 nucleotides Atu3795: Atu3795 - AcrB/AcrD/AcrF family protein, at 888,269 to 891,340 Atu3795 Atu3796: Atu3796 - efflux protein, at 891,337 to 892,422 Atu3796 Atu3797: Atu3797 - HlyD family secretion protein, at 892,422 to 893,498 Atu3797 Position (kb) 891 892 893Strain fitness (log2 ratio) -1 0 1 2 3at 890.613 kb on - strand, within Atu3795at 890.667 kb on + strand, within Atu3795at 890.712 kb on + strand, within Atu3795at 890.776 kb on + strand, within Atu3795at 890.878 kb on + strand, within Atu3795at 890.900 kb on + strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.908 kb on - strand, within Atu3795at 890.921 kb on - strand, within Atu3795at 890.978 kb on + strand, within Atu3795at 890.981 kb on - strand, within Atu3795at 891.061 kb on + strandat 891.075 kb on + strandat 891.077 kb on - strandat 891.079 kb on + strandat 891.087 kb on - strandat 891.087 kb on - strandat 891.110 kb on - strandat 891.145 kb on + strandat 891.191 kb on + strandat 891.194 kb on - strandat 891.196 kb on + strandat 891.199 kb on - strandat 891.274 kb on - strandat 891.292 kb on - strandat 891.359 kb on + strandat 891.378 kb on + strandat 891.378 kb on + strandat 891.378 kb on + strandat 891.385 kb on + strandat 891.446 kb on + strand, within Atu3796at 891.503 kb on - strand, within Atu3796at 891.629 kb on - strand, within Atu3796at 891.716 kb on - strand, within Atu3796at 891.758 kb on - strand, within Atu3796at 891.798 kb on + strand, within Atu3796at 891.807 kb on - strand, within Atu3796at 891.827 kb on - strand, within Atu3796at 891.901 kb on + strand, within Atu3796at 891.921 kb on + strand, within Atu3796at 891.928 kb on + strand, within Atu3796at 891.959 kb on + strand, within Atu3796at 892.002 kb on + strand, within Atu3796at 892.005 kb on - strand, within Atu3796at 892.055 kb on + strand, within Atu3796at 892.055 kb on + strand, within Atu3796at 892.063 kb on - strand, within Atu3796at 892.073 kb on - strand, within Atu3796at 892.073 kb on - strand, within Atu3796at 892.186 kb on - strand, within Atu3796at 892.255 kb on - strand, within Atu3796at 892.258 kb on + strand, within Atu3796at 892.300 kb on - strand, within Atu3796at 892.408 kb on + strandat 892.509 kb on - strandat 892.514 kb on + strandat 892.517 kb on - strandat 892.556 kb on + strand, within Atu3797at 892.559 kb on - strand, within Atu3797at 892.635 kb on - strand, within Atu3797at 892.729 kb on + strand, within Atu3797at 892.729 kb on + strand, within Atu3797at 892.729 kb on + strand, within Atu3797at 892.737 kb on - strand, within Atu3797at 892.737 kb on - strand, within Atu3797at 892.747 kb on + strand, within Atu3797at 892.782 kb on + strand, within Atu3797at 892.995 kb on - strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 892.999 kb on + strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.007 kb on - strand, within Atu3797at 893.034 kb on + strand, within Atu3797at 893.042 kb on - strand, within Atu3797at 893.042 kb on - strand, within Atu3797at 893.098 kb on - strand, within Atu3797at 893.116 kb on + strand, within Atu3797at 893.313 kb on + strand, within Atu3797at 893.313 kb on + strand, within Atu3797at 893.331 kb on - strand, within Atu3797at 893.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nerol 1.25 mM
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890,613 - Atu3795 0.76 +0.8
890,667 + Atu3795 0.78 -0.2
890,712 + Atu3795 0.80 +0.4
890,776 + Atu3795 0.82 +0.3
890,878 + Atu3795 0.85 +0.3
890,900 + Atu3795 0.86 +1.1
890,908 - Atu3795 0.86 +0.5
890,908 - Atu3795 0.86 +0.3
890,908 - Atu3795 0.86 +0.3
890,921 - Atu3795 0.86 +0.4
890,978 + Atu3795 0.88 +0.0
890,981 - Atu3795 0.88 +0.5
891,061 + +0.4
891,075 + +0.3
891,077 - -0.7
891,079 + +0.3
891,087 - -0.5
891,087 - +0.2
891,110 - +0.4
891,145 + +1.4
891,191 + +0.7
891,194 - +0.3
891,196 + +0.2
891,199 - +0.4
891,274 - +0.6
891,292 - +0.6
891,359 + +0.3
891,378 + +0.1
891,378 + +0.5
891,378 + +1.2
891,385 + +0.2
891,446 + Atu3796 0.10 +0.3
891,503 - Atu3796 0.15 +0.1
891,629 - Atu3796 0.27 +0.5
891,716 - Atu3796 0.35 +0.5
891,758 - Atu3796 0.39 +0.7
891,798 + Atu3796 0.42 +0.3
891,807 - Atu3796 0.43 -0.3
891,827 - Atu3796 0.45 +0.6
891,901 + Atu3796 0.52 +0.7
891,921 + Atu3796 0.54 -0.3
891,928 + Atu3796 0.54 +1.4
891,959 + Atu3796 0.57 +0.9
892,002 + Atu3796 0.61 +0.6
892,005 - Atu3796 0.62 +1.0
892,055 + Atu3796 0.66 +0.5
892,055 + Atu3796 0.66 +0.5
892,063 - Atu3796 0.67 +0.4
892,073 - Atu3796 0.68 +0.3
892,073 - Atu3796 0.68 -0.5
892,186 - Atu3796 0.78 +3.0
892,255 - Atu3796 0.85 +0.9
892,258 + Atu3796 0.85 +0.4
892,300 - Atu3796 0.89 +0.2
892,408 + +0.1
892,509 - +0.5
892,514 + +0.3
892,517 - -0.5
892,556 + Atu3797 0.12 +0.2
892,559 - Atu3797 0.13 +0.1
892,635 - Atu3797 0.20 +0.6
892,729 + Atu3797 0.29 +1.0
892,729 + Atu3797 0.29 +0.1
892,729 + Atu3797 0.29 -0.0
892,737 - Atu3797 0.29 +0.8
892,737 - Atu3797 0.29 +1.0
892,747 + Atu3797 0.30 -0.1
892,782 + Atu3797 0.33 +0.7
892,995 - Atu3797 0.53 -0.5
892,999 + Atu3797 0.54 +0.4
892,999 + Atu3797 0.54 -0.8
892,999 + Atu3797 0.54 -0.7
892,999 + Atu3797 0.54 +1.3
892,999 + Atu3797 0.54 -0.1
892,999 + Atu3797 0.54 +0.2
893,007 - Atu3797 0.54 +0.2
893,007 - Atu3797 0.54 -0.4
893,007 - Atu3797 0.54 +0.3
893,007 - Atu3797 0.54 +1.8
893,007 - Atu3797 0.54 +0.7
893,007 - Atu3797 0.54 +0.1
893,007 - Atu3797 0.54 -0.4
893,034 + Atu3797 0.57 +0.5
893,042 - Atu3797 0.58 +1.2
893,042 - Atu3797 0.58 +1.4
893,098 - Atu3797 0.63 -1.0
893,116 + Atu3797 0.64 +0.8
893,313 + Atu3797 0.83 +1.0
893,313 + Atu3797 0.83 +0.2
893,331 - Atu3797 0.84 +2.6
893,394 + +0.2

Or see this region's nucleotide sequence