Strain Fitness in Agrobacterium fabrum C58 around Atu1812

Experiment: Nerol 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1809 and Atu1810 are separated by 269 nucleotidesAtu1810 and Atu1811 are separated by 42 nucleotidesAtu1811 and Atu1812 are separated by 181 nucleotidesAtu1812 and Atu1813 are separated by 10 nucleotidesAtu1813 and Atu1814 are separated by 90 nucleotides Atu1809: Atu1809 - tRNA-Pro, at 1,791,716 to 1,791,792 Atu1809 Atu1810: Atu1810 - hypothetical protein, at 1,792,062 to 1,792,367 Atu1810 Atu1811: Atu1811 - tRNA-Arg, at 1,792,410 to 1,792,486 Atu1811 Atu1812: Atu1812 - hypothetical protein, at 1,792,668 to 1,792,880 Atu1812 Atu1813: Atu1813 - hypothetical protein, at 1,792,891 to 1,793,313 Atu1813 Atu1814: Atu1814 - epoxide hydrolase, at 1,793,404 to 1,794,459 Atu1814 Position (kb) 1792 1793Strain fitness (log2 ratio) -2 -1 0 1at 1791.855 kb on + strandat 1791.868 kb on - strandat 1791.930 kb on - strandat 1792.249 kb on + strand, within Atu1810at 1792.259 kb on + strand, within Atu1810at 1792.352 kb on + strandat 1792.352 kb on + strandat 1792.352 kb on + strandat 1792.531 kb on - strandat 1792.666 kb on - strandat 1792.721 kb on - strand, within Atu1812at 1792.771 kb on + strand, within Atu1812at 1792.771 kb on + strand, within Atu1812at 1792.791 kb on + strand, within Atu1812at 1792.799 kb on + strand, within Atu1812at 1792.931 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nerol 1.25 mM
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1,791,855 + -0.3
1,791,868 - -0.3
1,791,930 - -0.9
1,792,249 + Atu1810 0.61 -0.1
1,792,259 + Atu1810 0.64 -2.0
1,792,352 + -0.7
1,792,352 + +0.1
1,792,352 + -0.9
1,792,531 - -1.7
1,792,666 - -0.1
1,792,721 - Atu1812 0.25 +0.9
1,792,771 + Atu1812 0.48 +0.3
1,792,771 + Atu1812 0.48 -0.0
1,792,791 + Atu1812 0.58 +0.2
1,792,799 + Atu1812 0.62 -0.2
1,792,931 - -0.4

Or see this region's nucleotide sequence