Strain Fitness in Agrobacterium fabrum C58 around Atu6104

Experiment: Menthol 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu6103 and Atu6104 are separated by 96 nucleotidesAtu6104 and Atu6105 overlap by 4 nucleotidesAtu6105 and Atu6106 overlap by 4 nucleotides Atu6103: Atu6103 - plasmid partitioning protein, at 125,894 to 127,651 Atu6103 Atu6104: Atu6104 - conserved hypothetical protein, at 127,748 to 128,221 Atu6104 Atu6105: Atu6105 - conserved hypothetical protein, at 128,218 to 129,105 Atu6105 Atu6106: Atu6106 - conserved hypothetical protein, at 129,102 to 129,410 Atu6106 Position (kb) 127 128 129Strain fitness (log2 ratio) -1 0 1 2 3at 126.763 kb on + strand, within Atu6103at 126.805 kb on - strand, within Atu6103at 126.825 kb on - strand, within Atu6103at 126.943 kb on + strand, within Atu6103at 126.943 kb on + strand, within Atu6103at 127.080 kb on - strand, within Atu6103at 127.086 kb on + strand, within Atu6103at 127.197 kb on + strand, within Atu6103at 127.287 kb on + strand, within Atu6103at 127.313 kb on - strand, within Atu6103at 127.379 kb on - strand, within Atu6103at 127.402 kb on + strand, within Atu6103at 127.427 kb on - strand, within Atu6103at 127.447 kb on + strand, within Atu6103at 127.462 kb on + strand, within Atu6103at 127.470 kb on - strand, within Atu6103at 127.492 kb on - strandat 127.511 kb on + strandat 127.579 kb on - strandat 127.593 kb on + strandat 127.603 kb on + strandat 127.609 kb on - strandat 127.641 kb on + strandat 127.646 kb on + strandat 127.646 kb on + strandat 127.654 kb on - strandat 127.741 kb on + strandat 127.749 kb on - strandat 127.787 kb on + strandat 127.787 kb on + strandat 127.787 kb on + strandat 127.787 kb on + strandat 127.787 kb on + strandat 127.787 kb on + strandat 127.795 kb on - strandat 127.795 kb on - strandat 127.795 kb on - strandat 127.795 kb on - strandat 127.857 kb on - strand, within Atu6104at 127.861 kb on + strand, within Atu6104at 127.946 kb on + strand, within Atu6104at 127.965 kb on + strand, within Atu6104at 127.965 kb on + strand, within Atu6104at 128.057 kb on + strand, within Atu6104at 128.084 kb on + strand, within Atu6104at 128.089 kb on + strand, within Atu6104at 128.097 kb on - strand, within Atu6104at 128.117 kb on + strand, within Atu6104at 128.235 kb on + strandat 128.284 kb on - strandat 128.347 kb on - strand, within Atu6105at 128.358 kb on + strand, within Atu6105at 128.362 kb on + strand, within Atu6105at 128.414 kb on - strand, within Atu6105at 128.462 kb on + strand, within Atu6105at 128.462 kb on + strand, within Atu6105at 128.471 kb on + strand, within Atu6105at 128.471 kb on + strand, within Atu6105at 128.479 kb on - strand, within Atu6105at 128.479 kb on - strand, within Atu6105at 128.498 kb on + strand, within Atu6105at 128.517 kb on + strand, within Atu6105at 128.536 kb on - strand, within Atu6105at 128.558 kb on - strand, within Atu6105at 128.573 kb on + strand, within Atu6105at 128.581 kb on - strand, within Atu6105at 128.584 kb on - strand, within Atu6105at 128.584 kb on - strand, within Atu6105at 128.669 kb on - strand, within Atu6105at 128.669 kb on - strand, within Atu6105at 128.700 kb on - strand, within Atu6105at 128.723 kb on + strand, within Atu6105at 128.731 kb on - strand, within Atu6105at 128.731 kb on - strand, within Atu6105at 128.731 kb on - strand, within Atu6105at 128.749 kb on - strand, within Atu6105at 128.751 kb on + strand, within Atu6105at 128.759 kb on - strand, within Atu6105at 128.768 kb on + strand, within Atu6105at 128.770 kb on + strand, within Atu6105at 128.836 kb on + strand, within Atu6105at 128.906 kb on - strand, within Atu6105at 128.924 kb on + strand, within Atu6105at 129.052 kb on + strandat 129.065 kb on + strandat 129.065 kb on + strandat 129.071 kb on + strandat 129.088 kb on - strandat 129.221 kb on - strand, within Atu6106

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Per-strain Table

Position Strand Gene LocusTag Fraction Menthol 1.25 mM
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126,763 + Atu6103 0.49 -0.2
126,805 - Atu6103 0.52 -0.3
126,825 - Atu6103 0.53 +0.2
126,943 + Atu6103 0.60 -0.2
126,943 + Atu6103 0.60 +0.3
127,080 - Atu6103 0.67 +0.4
127,086 + Atu6103 0.68 +0.1
127,197 + Atu6103 0.74 +0.4
127,287 + Atu6103 0.79 -0.7
127,313 - Atu6103 0.81 -0.2
127,379 - Atu6103 0.84 -0.3
127,402 + Atu6103 0.86 -0.0
127,427 - Atu6103 0.87 +0.3
127,447 + Atu6103 0.88 +0.0
127,462 + Atu6103 0.89 -0.4
127,470 - Atu6103 0.90 +0.2
127,492 - +0.3
127,511 + -0.2
127,579 - +0.2
127,593 + +0.3
127,603 + -0.1
127,609 - +0.0
127,641 + -0.2
127,646 + +0.3
127,646 + +0.1
127,654 - -0.3
127,741 + +0.9
127,749 - -0.0
127,787 + +0.1
127,787 + +0.2
127,787 + +1.8
127,787 + -0.7
127,787 + -0.8
127,787 + +0.4
127,795 - -0.1
127,795 - -0.2
127,795 - -0.4
127,795 - -0.4
127,857 - Atu6104 0.23 -0.2
127,861 + Atu6104 0.24 +1.0
127,946 + Atu6104 0.42 -0.2
127,965 + Atu6104 0.46 +0.9
127,965 + Atu6104 0.46 +0.1
128,057 + Atu6104 0.65 +0.1
128,084 + Atu6104 0.71 +0.8
128,089 + Atu6104 0.72 +0.8
128,097 - Atu6104 0.74 -0.1
128,117 + Atu6104 0.78 +0.7
128,235 + +0.1
128,284 - +0.3
128,347 - Atu6105 0.15 +0.2
128,358 + Atu6105 0.16 +0.0
128,362 + Atu6105 0.16 -0.0
128,414 - Atu6105 0.22 +0.3
128,462 + Atu6105 0.27 +0.1
128,462 + Atu6105 0.27 +0.0
128,471 + Atu6105 0.28 +0.9
128,471 + Atu6105 0.28 -0.0
128,479 - Atu6105 0.29 +0.5
128,479 - Atu6105 0.29 +0.3
128,498 + Atu6105 0.32 -0.3
128,517 + Atu6105 0.34 -0.1
128,536 - Atu6105 0.36 -0.6
128,558 - Atu6105 0.38 -0.1
128,573 + Atu6105 0.40 +0.2
128,581 - Atu6105 0.41 +0.1
128,584 - Atu6105 0.41 +0.1
128,584 - Atu6105 0.41 -0.7
128,669 - Atu6105 0.51 +0.4
128,669 - Atu6105 0.51 -0.4
128,700 - Atu6105 0.54 -1.0
128,723 + Atu6105 0.57 -0.2
128,731 - Atu6105 0.58 +0.3
128,731 - Atu6105 0.58 +0.1
128,731 - Atu6105 0.58 -0.2
128,749 - Atu6105 0.60 -0.1
128,751 + Atu6105 0.60 -0.7
128,759 - Atu6105 0.61 -0.1
128,768 + Atu6105 0.62 +0.2
128,770 + Atu6105 0.62 -0.3
128,836 + Atu6105 0.70 -0.2
128,906 - Atu6105 0.77 +2.8
128,924 + Atu6105 0.80 +0.3
129,052 + +0.8
129,065 + +0.7
129,065 + -0.4
129,071 + -0.4
129,088 - -0.9
129,221 - Atu6106 0.39 -1.2

Or see this region's nucleotide sequence