Experiment: Menthol 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3379 and Atu3381 are separated by 180 nucleotides Atu3381 and Atu3382 are separated by 208 nucleotides
Atu3379: Atu3379 - peptide ABC transporter permease, at 421,382 to 422,326
Atu3379
Atu3381: Atu3381 - LysR family transcriptional regulator, at 422,507 to 423,412
Atu3381
Atu3382: Atu3382 - HlyD family secretion protein, at 423,621 to 424,934
Atu3382
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 421.541 kb on + strand, within Atu3379 at 421.541 kb on + strand, within Atu3379 at 421.615 kb on + strand, within Atu3379 at 421.641 kb on + strand, within Atu3379 at 421.643 kb on + strand, within Atu3379 at 421.648 kb on + strand, within Atu3379 at 421.780 kb on + strand, within Atu3379 at 421.788 kb on - strand, within Atu3379 at 421.817 kb on + strand, within Atu3379 at 421.902 kb on - strand, within Atu3379 at 421.905 kb on + strand, within Atu3379 at 421.917 kb on - strand, within Atu3379 at 421.923 kb on + strand, within Atu3379 at 421.931 kb on - strand, within Atu3379 at 422.008 kb on - strand, within Atu3379 at 422.115 kb on - strand, within Atu3379 at 422.164 kb on + strand, within Atu3379 at 422.164 kb on + strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.172 kb on - strand, within Atu3379 at 422.178 kb on + strand, within Atu3379 at 422.186 kb on - strand, within Atu3379 at 422.188 kb on + strand, within Atu3379 at 422.197 kb on + strand, within Atu3379 at 422.212 kb on + strand, within Atu3379 at 422.288 kb on - strand at 422.300 kb on - strand at 422.357 kb on + strand at 422.459 kb on + strand at 422.459 kb on + strand at 422.467 kb on - strand at 422.581 kb on - strand at 422.581 kb on - strand at 422.703 kb on - strand, within Atu3381 at 422.716 kb on - strand, within Atu3381 at 422.874 kb on - strand, within Atu3381 at 423.003 kb on + strand, within Atu3381 at 423.016 kb on - strand, within Atu3381 at 423.256 kb on - strand, within Atu3381 at 423.274 kb on - strand, within Atu3381 at 423.299 kb on - strand, within Atu3381 at 423.398 kb on - strand at 423.476 kb on + strand at 423.537 kb on - strand at 423.591 kb on - strand at 423.643 kb on - strand at 423.670 kb on + strand at 423.670 kb on + strand at 423.683 kb on - strand at 423.688 kb on - strand at 423.708 kb on + strand at 423.795 kb on + strand, within Atu3382 at 423.865 kb on - strand, within Atu3382 at 423.883 kb on - strand, within Atu3382 at 423.896 kb on + strand, within Atu3382 at 423.913 kb on + strand, within Atu3382 at 423.932 kb on - strand, within Atu3382 at 423.984 kb on - strand, within Atu3382 at 424.102 kb on + strand, within Atu3382 at 424.127 kb on + strand, within Atu3382 at 424.148 kb on + strand, within Atu3382 at 424.165 kb on + strand, within Atu3382 at 424.261 kb on + strand, within Atu3382 at 424.293 kb on + strand, within Atu3382
Per-strain Table
Position Strand Gene LocusTag Fraction Menthol 1.25 mM remove 421,541 + Atu3379 0.17 -0.8 421,541 + Atu3379 0.17 -0.3 421,615 + Atu3379 0.25 -0.2 421,641 + Atu3379 0.27 +0.2 421,643 + Atu3379 0.28 -1.0 421,648 + Atu3379 0.28 -0.7 421,780 + Atu3379 0.42 +0.4 421,788 - Atu3379 0.43 +0.0 421,817 + Atu3379 0.46 -0.1 421,902 - Atu3379 0.55 -0.4 421,905 + Atu3379 0.55 +0.3 421,917 - Atu3379 0.57 +0.1 421,923 + Atu3379 0.57 -0.2 421,931 - Atu3379 0.58 -0.4 422,008 - Atu3379 0.66 -0.6 422,115 - Atu3379 0.78 -0.2 422,164 + Atu3379 0.83 -0.1 422,164 + Atu3379 0.83 -0.1 422,172 - Atu3379 0.84 +0.6 422,172 - Atu3379 0.84 -1.2 422,172 - Atu3379 0.84 -0.1 422,178 + Atu3379 0.84 +0.3 422,186 - Atu3379 0.85 -0.0 422,188 + Atu3379 0.85 -0.3 422,197 + Atu3379 0.86 -0.2 422,212 + Atu3379 0.88 -0.1 422,288 - -0.1 422,300 - +0.1 422,357 + -0.4 422,459 + +0.3 422,459 + +0.7 422,467 - +0.3 422,581 - -0.6 422,581 - -0.4 422,703 - Atu3381 0.22 -0.1 422,716 - Atu3381 0.23 -0.1 422,874 - Atu3381 0.41 +0.9 423,003 + Atu3381 0.55 +0.1 423,016 - Atu3381 0.56 +0.1 423,256 - Atu3381 0.83 -0.4 423,274 - Atu3381 0.85 +0.9 423,299 - Atu3381 0.87 +0.9 423,398 - +0.9 423,476 + +0.5 423,537 - +0.7 423,591 - +0.7 423,643 - +0.1 423,670 + -0.6 423,670 + -0.1 423,683 - +1.6 423,688 - +0.2 423,708 + +0.5 423,795 + Atu3382 0.13 -0.7 423,865 - Atu3382 0.19 +0.3 423,883 - Atu3382 0.20 -0.9 423,896 + Atu3382 0.21 -0.4 423,913 + Atu3382 0.22 +0.3 423,932 - Atu3382 0.24 +0.3 423,984 - Atu3382 0.28 -3.0 424,102 + Atu3382 0.37 +0.4 424,127 + Atu3382 0.39 -0.3 424,148 + Atu3382 0.40 +0.2 424,165 + Atu3382 0.41 +0.6 424,261 + Atu3382 0.49 +0.0 424,293 + Atu3382 0.51 -0.1
Or see this region's nucleotide sequence