Experiment: Menthol 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3084 and Atu3085 are separated by 151 nucleotides Atu3085 and Atu3086 are separated by 11 nucleotides Atu3086 and Atu3087 are separated by 3 nucleotides
Atu3084: Atu3084 - RNA polymerase sigma factor, at 90,145 to 90,687
Atu3084
Atu3085: Atu3085 - hydantoin racemase, at 90,839 to 91,582
Atu3085
Atu3086: Atu3086 - spermidine/putrescine ABC transporter permease, at 91,594 to 92,412
Atu3086
Atu3087: Atu3087 - spermidine/putrescine ABC transporter permease, at 92,416 to 93,327
Atu3087
Position (kb) 91
92
93 Strain fitness (log2 ratio) -1
0
1 at 90.719 kb on - strand at 90.867 kb on + strand at 90.882 kb on + strand at 90.890 kb on - strand at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.961 kb on + strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 90.969 kb on - strand, within Atu3085 at 91.020 kb on + strand, within Atu3085 at 91.173 kb on - strand, within Atu3085 at 91.262 kb on + strand, within Atu3085 at 91.348 kb on + strand, within Atu3085 at 91.385 kb on + strand, within Atu3085 at 91.392 kb on + strand, within Atu3085 at 91.401 kb on + strand, within Atu3085 at 91.554 kb on + strand at 91.623 kb on - strand at 91.640 kb on - strand at 91.758 kb on - strand, within Atu3086 at 91.785 kb on + strand, within Atu3086 at 91.785 kb on - strand, within Atu3086 at 91.797 kb on + strand, within Atu3086 at 91.830 kb on - strand, within Atu3086 at 91.865 kb on - strand, within Atu3086 at 91.922 kb on + strand, within Atu3086 at 92.015 kb on - strand, within Atu3086 at 92.130 kb on - strand, within Atu3086 at 92.252 kb on - strand, within Atu3086 at 92.262 kb on - strand, within Atu3086 at 92.332 kb on - strand at 92.355 kb on - strand at 92.414 kb on + strand at 92.414 kb on + strand at 92.422 kb on - strand at 92.422 kb on - strand at 92.431 kb on + strand at 92.439 kb on - strand at 92.469 kb on - strand at 92.479 kb on + strand at 92.484 kb on + strand at 92.484 kb on + strand at 92.581 kb on - strand, within Atu3087 at 92.598 kb on - strand, within Atu3087 at 92.676 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.762 kb on + strand, within Atu3087 at 92.770 kb on - strand, within Atu3087 at 92.774 kb on + strand, within Atu3087 at 92.791 kb on + strand, within Atu3087 at 92.799 kb on - strand, within Atu3087 at 92.813 kb on + strand, within Atu3087 at 92.867 kb on + strand, within Atu3087 at 92.875 kb on - strand, within Atu3087 at 92.953 kb on - strand, within Atu3087 at 92.964 kb on - strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.020 kb on + strand, within Atu3087 at 93.028 kb on - strand, within Atu3087 at 93.083 kb on - strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.090 kb on + strand, within Atu3087 at 93.115 kb on + strand, within Atu3087 at 93.139 kb on + strand, within Atu3087 at 93.244 kb on + strand at 93.272 kb on - strand at 93.312 kb on + strand at 93.312 kb on + strand at 93.332 kb on - strand at 93.376 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Menthol 1.25 mM remove 90,719 - -0.4 90,867 + -0.2 90,882 + -0.3 90,890 - -0.1 90,961 + Atu3085 0.16 +0.3 90,961 + Atu3085 0.16 -0.1 90,961 + Atu3085 0.16 +0.3 90,961 + Atu3085 0.16 -0.1 90,969 - Atu3085 0.17 +0.0 90,969 - Atu3085 0.17 +0.4 91,020 + Atu3085 0.24 +0.2 91,173 - Atu3085 0.45 -0.3 91,262 + Atu3085 0.57 +0.1 91,348 + Atu3085 0.68 +0.1 91,385 + Atu3085 0.73 -0.6 91,392 + Atu3085 0.74 +0.6 91,401 + Atu3085 0.76 +0.4 91,554 + -0.3 91,623 - +0.1 91,640 - -0.1 91,758 - Atu3086 0.20 -0.6 91,785 + Atu3086 0.23 +0.7 91,785 - Atu3086 0.23 -0.1 91,797 + Atu3086 0.25 +0.5 91,830 - Atu3086 0.29 +1.2 91,865 - Atu3086 0.33 +0.3 91,922 + Atu3086 0.40 +0.6 92,015 - Atu3086 0.51 +0.1 92,130 - Atu3086 0.65 +0.4 92,252 - Atu3086 0.80 +0.2 92,262 - Atu3086 0.82 +0.7 92,332 - -0.5 92,355 - -1.0 92,414 + +0.7 92,414 + -0.0 92,422 - -0.1 92,422 - -0.0 92,431 + +0.0 92,439 - +0.4 92,469 - +0.0 92,479 + +0.1 92,484 + +0.4 92,484 + +0.0 92,581 - Atu3087 0.18 +1.5 92,598 - Atu3087 0.20 +0.1 92,676 + Atu3087 0.29 +0.1 92,762 + Atu3087 0.38 +0.1 92,762 + Atu3087 0.38 +1.0 92,770 - Atu3087 0.39 +0.2 92,774 + Atu3087 0.39 -0.3 92,791 + Atu3087 0.41 +0.3 92,799 - Atu3087 0.42 -0.6 92,813 + Atu3087 0.44 +0.0 92,867 + Atu3087 0.49 -0.1 92,875 - Atu3087 0.50 +0.4 92,953 - Atu3087 0.59 -0.1 92,964 - Atu3087 0.60 -0.8 93,020 + Atu3087 0.66 +0.0 93,020 + Atu3087 0.66 -0.8 93,020 + Atu3087 0.66 +0.3 93,020 + Atu3087 0.66 -1.5 93,020 + Atu3087 0.66 -0.1 93,020 + Atu3087 0.66 -0.5 93,020 + Atu3087 0.66 +1.0 93,028 - Atu3087 0.67 -0.9 93,083 - Atu3087 0.73 +0.5 93,090 + Atu3087 0.74 -1.0 93,090 + Atu3087 0.74 +0.9 93,115 + Atu3087 0.77 -0.9 93,139 + Atu3087 0.79 -0.7 93,244 + -0.2 93,272 - +0.2 93,312 + +0.0 93,312 + +0.1 93,332 - -0.4 93,376 + +0.5
Or see this region's nucleotide sequence