Experiment: Ferulic Acid 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3383 and Atu3384 are separated by 14 nucleotides Atu3384 and Atu3385 are separated by 103 nucleotides
Atu3383: Atu3383 - rhizobicin secretion, at 424,921 to 426,768
Atu3383
Atu3384: Atu3384 - hypothetical protein, at 426,783 to 427,538
Atu3384
Atu3385: Atu3385 - heme receptor, at 427,642 to 430,413
Atu3385
Position (kb) 426
427
428 Strain fitness (log2 ratio) -1
0
1
2 at 425.837 kb on + strand, within Atu3383 at 425.837 kb on + strand, within Atu3383 at 425.850 kb on - strand, within Atu3383 at 426.076 kb on + strand, within Atu3383 at 426.078 kb on - strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.081 kb on + strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.089 kb on - strand, within Atu3383 at 426.185 kb on + strand, within Atu3383 at 426.255 kb on + strand, within Atu3383 at 426.275 kb on + strand, within Atu3383 at 426.334 kb on - strand, within Atu3383 at 426.385 kb on + strand, within Atu3383 at 426.433 kb on - strand, within Atu3383 at 426.447 kb on + strand, within Atu3383 at 426.447 kb on + strand, within Atu3383 at 426.465 kb on - strand, within Atu3383 at 426.502 kb on + strand, within Atu3383 at 426.552 kb on + strand, within Atu3383 at 426.560 kb on - strand, within Atu3383 at 426.565 kb on - strand, within Atu3383 at 426.580 kb on - strand, within Atu3383 at 426.638 kb on + strand at 426.656 kb on + strand at 426.676 kb on - strand at 426.890 kb on + strand, within Atu3384 at 426.986 kb on - strand, within Atu3384 at 427.037 kb on + strand, within Atu3384 at 427.045 kb on - strand, within Atu3384 at 427.070 kb on + strand, within Atu3384 at 427.278 kb on + strand, within Atu3384 at 427.321 kb on + strand, within Atu3384 at 427.418 kb on + strand, within Atu3384 at 427.421 kb on - strand, within Atu3384 at 427.428 kb on + strand, within Atu3384 at 427.446 kb on - strand, within Atu3384 at 427.450 kb on + strand, within Atu3384 at 427.458 kb on - strand, within Atu3384 at 427.499 kb on + strand at 427.504 kb on + strand at 427.533 kb on + strand at 427.541 kb on + strand at 427.548 kb on - strand at 427.556 kb on + strand at 427.556 kb on + strand at 427.564 kb on - strand at 427.578 kb on - strand at 427.648 kb on - strand at 427.775 kb on + strand at 427.778 kb on + strand at 427.851 kb on + strand at 427.859 kb on - strand at 427.875 kb on - strand at 428.101 kb on + strand, within Atu3385 at 428.109 kb on - strand, within Atu3385 at 428.109 kb on - strand, within Atu3385 at 428.134 kb on + strand, within Atu3385 at 428.152 kb on + strand, within Atu3385 at 428.183 kb on + strand, within Atu3385 at 428.191 kb on - strand, within Atu3385 at 428.197 kb on - strand, within Atu3385 at 428.202 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.229 kb on + strand, within Atu3385 at 428.231 kb on + strand, within Atu3385 at 428.237 kb on - strand, within Atu3385 at 428.513 kb on - strand, within Atu3385 at 428.520 kb on + strand, within Atu3385
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 1.25 mM remove 425,837 + Atu3383 0.50 +0.1 425,837 + Atu3383 0.50 +0.1 425,850 - Atu3383 0.50 +0.2 426,076 + Atu3383 0.62 -1.1 426,078 - Atu3383 0.63 +0.1 426,081 + Atu3383 0.63 -1.4 426,081 + Atu3383 0.63 +0.7 426,081 + Atu3383 0.63 +0.5 426,089 - Atu3383 0.63 +1.4 426,089 - Atu3383 0.63 +0.0 426,089 - Atu3383 0.63 +0.8 426,089 - Atu3383 0.63 -0.1 426,089 - Atu3383 0.63 -0.2 426,185 + Atu3383 0.68 +1.4 426,255 + Atu3383 0.72 -0.2 426,275 + Atu3383 0.73 -0.7 426,334 - Atu3383 0.76 -0.6 426,385 + Atu3383 0.79 -0.0 426,433 - Atu3383 0.82 +0.2 426,447 + Atu3383 0.83 +0.7 426,447 + Atu3383 0.83 +0.1 426,465 - Atu3383 0.84 +0.3 426,502 + Atu3383 0.86 -0.2 426,552 + Atu3383 0.88 -0.2 426,560 - Atu3383 0.89 -0.2 426,565 - Atu3383 0.89 -0.2 426,580 - Atu3383 0.90 +0.1 426,638 + -0.4 426,656 + +0.5 426,676 - +0.0 426,890 + Atu3384 0.14 +0.0 426,986 - Atu3384 0.27 -0.1 427,037 + Atu3384 0.34 -0.0 427,045 - Atu3384 0.35 +0.0 427,070 + Atu3384 0.38 +0.8 427,278 + Atu3384 0.65 +0.0 427,321 + Atu3384 0.71 +0.3 427,418 + Atu3384 0.84 -0.1 427,421 - Atu3384 0.84 +0.3 427,428 + Atu3384 0.85 +0.3 427,446 - Atu3384 0.88 +1.1 427,450 + Atu3384 0.88 -0.0 427,458 - Atu3384 0.89 +0.7 427,499 + +0.2 427,504 + +0.2 427,533 + -0.4 427,541 + -0.2 427,548 - -0.0 427,556 + -0.4 427,556 + +0.4 427,564 - -0.4 427,578 - +0.3 427,648 - -0.2 427,775 + +0.3 427,778 + -0.4 427,851 + +0.6 427,859 - -1.3 427,875 - +1.2 428,101 + Atu3385 0.17 +0.0 428,109 - Atu3385 0.17 -0.0 428,109 - Atu3385 0.17 -0.1 428,134 + Atu3385 0.18 +1.8 428,152 + Atu3385 0.18 -0.5 428,183 + Atu3385 0.20 -0.0 428,191 - Atu3385 0.20 -0.2 428,197 - Atu3385 0.20 +0.5 428,202 + Atu3385 0.20 +0.8 428,229 + Atu3385 0.21 -0.8 428,229 + Atu3385 0.21 -0.0 428,229 + Atu3385 0.21 -0.1 428,229 + Atu3385 0.21 +0.2 428,231 + Atu3385 0.21 +0.3 428,237 - Atu3385 0.21 -0.2 428,513 - Atu3385 0.31 +1.0 428,520 + Atu3385 0.32 -0.3
Or see this region's nucleotide sequence