Experiment: Ferulic Acid 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3213 and Atu3214 overlap by 4 nucleotides Atu3214 and Atu3215 overlap by 4 nucleotides Atu3215 and Atu3216 overlap by 4 nucleotides Atu3216 and Atu3217 are separated by 3 nucleotides
Atu3213: Atu3213 - oligopeptide ABC transporter permease, at 228,208 to 229,197
Atu3213
Atu3214: Atu3214 - oligopeptide ABC transporter permease, at 229,194 to 230,024
Atu3214
Atu3215: Atu3215 - oligopeptide ABC transporter ATPase, at 230,021 to 230,824
Atu3215
Atu3216: Atu3216 - oligopeptide ABC transporter ATPase, at 230,821 to 231,606
Atu3216
Atu3217: Atu3217 - aspartate aminotransferase, at 231,610 to 232,728
Atu3217
Position (kb) 230
231 Strain fitness (log2 ratio) -1
0
1 at 229.047 kb on + strand, within Atu3213 at 229.048 kb on + strand, within Atu3213 at 229.099 kb on - strand at 229.099 kb on - strand at 229.099 kb on - strand at 229.109 kb on - strand at 229.111 kb on + strand at 229.193 kb on - strand at 229.230 kb on - strand at 229.266 kb on - strand at 229.353 kb on + strand, within Atu3214 at 229.359 kb on - strand, within Atu3214 at 229.366 kb on + strand, within Atu3214 at 229.369 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.374 kb on - strand, within Atu3214 at 229.389 kb on - strand, within Atu3214 at 229.413 kb on + strand, within Atu3214 at 229.526 kb on - strand, within Atu3214 at 229.596 kb on - strand, within Atu3214 at 229.728 kb on - strand, within Atu3214 at 229.875 kb on - strand, within Atu3214 at 229.901 kb on + strand, within Atu3214 at 229.971 kb on - strand at 229.983 kb on + strand at 229.991 kb on - strand at 229.991 kb on - strand at 230.082 kb on + strand at 230.090 kb on - strand at 230.090 kb on - strand at 230.100 kb on - strand at 230.107 kb on - strand, within Atu3215 at 230.297 kb on - strand, within Atu3215 at 230.446 kb on + strand, within Atu3215 at 230.601 kb on - strand, within Atu3215 at 230.627 kb on - strand, within Atu3215 at 230.660 kb on - strand, within Atu3215 at 230.666 kb on - strand, within Atu3215 at 230.749 kb on + strand at 230.750 kb on + strand at 230.755 kb on - strand at 230.755 kb on - strand at 230.758 kb on - strand at 230.838 kb on - strand at 230.853 kb on + strand at 230.853 kb on + strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.861 kb on - strand at 230.991 kb on + strand, within Atu3216 at 231.012 kb on - strand, within Atu3216 at 231.149 kb on - strand, within Atu3216 at 231.156 kb on + strand, within Atu3216 at 231.221 kb on + strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.283 kb on - strand, within Atu3216 at 231.305 kb on + strand, within Atu3216 at 231.461 kb on - strand, within Atu3216 at 231.543 kb on + strand at 231.606 kb on + strand at 231.610 kb on - strand at 231.610 kb on - strand at 231.614 kb on - strand at 231.671 kb on - strand at 231.671 kb on - strand at 231.763 kb on + strand, within Atu3217 at 231.806 kb on + strand, within Atu3217
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid 1.25 mM remove 229,047 + Atu3213 0.85 +0.2 229,048 + Atu3213 0.85 +0.4 229,099 - +0.1 229,099 - -0.1 229,099 - +1.1 229,109 - +0.1 229,111 + +1.1 229,193 - +0.1 229,230 - -0.5 229,266 - -0.1 229,353 + Atu3214 0.19 +0.7 229,359 - Atu3214 0.20 -0.4 229,366 + Atu3214 0.21 -0.5 229,369 - Atu3214 0.21 +1.1 229,374 - Atu3214 0.22 -0.2 229,374 - Atu3214 0.22 -0.4 229,389 - Atu3214 0.23 -0.6 229,413 + Atu3214 0.26 -0.2 229,526 - Atu3214 0.40 -0.2 229,596 - Atu3214 0.48 +0.7 229,728 - Atu3214 0.64 +0.7 229,875 - Atu3214 0.82 +0.0 229,901 + Atu3214 0.85 +0.1 229,971 - +0.1 229,983 + -0.9 229,991 - +0.8 229,991 - -0.6 230,082 + +0.6 230,090 - +0.2 230,090 - -0.3 230,100 - -0.2 230,107 - Atu3215 0.11 -0.0 230,297 - Atu3215 0.34 +0.4 230,446 + Atu3215 0.53 +0.6 230,601 - Atu3215 0.72 +1.6 230,627 - Atu3215 0.75 +0.1 230,660 - Atu3215 0.79 +0.4 230,666 - Atu3215 0.80 -0.3 230,749 + -0.2 230,750 + +1.6 230,755 - +0.4 230,755 - +0.3 230,758 - +0.6 230,838 - +0.1 230,853 + +0.8 230,853 + -0.2 230,861 - -0.0 230,861 - -0.4 230,861 - -0.1 230,861 - -0.9 230,861 - -0.2 230,991 + Atu3216 0.22 +0.2 231,012 - Atu3216 0.24 -0.3 231,149 - Atu3216 0.42 +0.4 231,156 + Atu3216 0.43 +0.1 231,221 + Atu3216 0.51 -0.3 231,283 - Atu3216 0.59 +0.7 231,283 - Atu3216 0.59 -0.3 231,283 - Atu3216 0.59 +0.2 231,305 + Atu3216 0.62 -0.1 231,461 - Atu3216 0.81 -0.4 231,543 + +0.0 231,606 + +0.6 231,610 - -0.1 231,610 - -0.0 231,614 - -1.0 231,671 - -0.3 231,671 - +0.0 231,763 + Atu3217 0.14 +0.2 231,806 + Atu3217 0.18 +0.1
Or see this region's nucleotide sequence