Strain Fitness in Agrobacterium fabrum C58 around Atu1023

Experiment: Ferulic Acid 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1022 and Atu1023 are separated by 22 nucleotidesAtu1023 and Atu1024 are separated by 64 nucleotides Atu1022: Atu1022 - soluble lytic transglycosylase, at 1,015,197 to 1,017,245 Atu1022 Atu1023: Atu1023 - hypothetical protein, at 1,017,268 to 1,017,564 Atu1023 Atu1024: Atu1024 - dihydrodipicolinate synthase, at 1,017,629 to 1,018,513 Atu1024 Position (kb) 1017 1018Strain fitness (log2 ratio) -1 0 1at 1016.433 kb on - strand, within Atu1022at 1016.478 kb on - strand, within Atu1022at 1016.478 kb on - strand, within Atu1022at 1016.484 kb on - strand, within Atu1022at 1016.519 kb on - strand, within Atu1022at 1016.577 kb on - strand, within Atu1022at 1016.615 kb on - strand, within Atu1022at 1016.778 kb on - strand, within Atu1022at 1016.895 kb on + strand, within Atu1022at 1017.004 kb on + strand, within Atu1022at 1017.004 kb on + strand, within Atu1022at 1017.004 kb on + strand, within Atu1022at 1017.004 kb on + strand, within Atu1022at 1017.012 kb on - strand, within Atu1022at 1017.058 kb on - strandat 1017.061 kb on + strandat 1017.069 kb on - strandat 1017.098 kb on - strandat 1017.166 kb on + strandat 1017.171 kb on + strandat 1017.171 kb on + strandat 1017.174 kb on - strandat 1017.179 kb on - strandat 1017.180 kb on + strandat 1017.187 kb on + strandat 1017.197 kb on - strandat 1017.385 kb on - strand, within Atu1023at 1017.558 kb on + strandat 1018.517 kb on - strandat 1018.552 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid 1.25 mM
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1,016,433 - Atu1022 0.60 -0.4
1,016,478 - Atu1022 0.63 +0.1
1,016,478 - Atu1022 0.63 -0.1
1,016,484 - Atu1022 0.63 -0.2
1,016,519 - Atu1022 0.65 +0.6
1,016,577 - Atu1022 0.67 +0.3
1,016,615 - Atu1022 0.69 -0.1
1,016,778 - Atu1022 0.77 +0.6
1,016,895 + Atu1022 0.83 +0.1
1,017,004 + Atu1022 0.88 -0.4
1,017,004 + Atu1022 0.88 -0.1
1,017,004 + Atu1022 0.88 -0.6
1,017,004 + Atu1022 0.88 +0.0
1,017,012 - Atu1022 0.89 +0.0
1,017,058 - +0.1
1,017,061 + -0.4
1,017,069 - -0.1
1,017,098 - +0.4
1,017,166 + +1.3
1,017,171 + +0.3
1,017,171 + +0.8
1,017,174 - +0.2
1,017,179 - +0.3
1,017,180 + -0.1
1,017,187 + -0.6
1,017,197 - -0.2
1,017,385 - Atu1023 0.39 +0.2
1,017,558 + -0.6
1,018,517 - -0.5
1,018,552 + +0.3

Or see this region's nucleotide sequence