Strain Fitness in Agrobacterium fabrum C58 around Atu0870

Experiment: Ferulic Acid 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0868 and Atu0869 are separated by 48 nucleotidesAtu0869 and Atu0870 are separated by 5 nucleotidesAtu0870 and Atu0871 are separated by 334 nucleotides Atu0868: Atu0868 - hypothetical protein, at 864,882 to 865,589 Atu0868 Atu0869: Atu0869 - hypothetical protein, at 865,638 to 866,006 Atu0869 Atu0870: Atu0870 - trans-aconitate methyltransferase, at 866,012 to 866,782 Atu0870 Atu0871: Atu0871 - branched-chain-amino-acid aminotransferase, at 867,117 to 867,998 Atu0871 Position (kb) 866 867Strain fitness (log2 ratio) -1 0 1 2at 865.039 kb on - strand, within Atu0868at 865.047 kb on + strand, within Atu0868at 865.122 kb on + strand, within Atu0868at 865.138 kb on + strand, within Atu0868at 865.146 kb on - strand, within Atu0868at 865.166 kb on + strand, within Atu0868at 865.169 kb on - strand, within Atu0868at 865.248 kb on - strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.263 kb on + strand, within Atu0868at 865.271 kb on - strand, within Atu0868at 865.276 kb on - strand, within Atu0868at 865.283 kb on - strand, within Atu0868at 865.325 kb on + strand, within Atu0868at 865.333 kb on - strand, within Atu0868at 865.412 kb on + strand, within Atu0868at 865.430 kb on - strand, within Atu0868at 865.441 kb on - strand, within Atu0868at 865.635 kb on + strandat 865.635 kb on + strandat 865.643 kb on - strandat 865.661 kb on + strandat 865.694 kb on + strand, within Atu0869at 865.694 kb on + strand, within Atu0869at 865.694 kb on + strand, within Atu0869at 865.700 kb on - strand, within Atu0869at 865.702 kb on - strand, within Atu0869at 865.704 kb on + strand, within Atu0869at 865.709 kb on + strand, within Atu0869at 865.717 kb on - strand, within Atu0869at 865.733 kb on - strand, within Atu0869at 865.757 kb on - strand, within Atu0869at 865.781 kb on - strand, within Atu0869at 865.794 kb on - strand, within Atu0869at 865.806 kb on - strand, within Atu0869at 865.949 kb on + strand, within Atu0869at 865.949 kb on - strand, within Atu0869at 865.980 kb on - strandat 865.994 kb on - strandat 866.010 kb on + strandat 866.122 kb on - strand, within Atu0870at 866.216 kb on + strand, within Atu0870at 866.236 kb on - strand, within Atu0870at 866.288 kb on + strand, within Atu0870at 866.338 kb on - strand, within Atu0870at 866.470 kb on - strand, within Atu0870at 866.482 kb on + strand, within Atu0870at 866.498 kb on - strand, within Atu0870at 866.598 kb on - strand, within Atu0870at 866.660 kb on - strand, within Atu0870at 866.669 kb on + strand, within Atu0870at 866.811 kb on + strandat 866.982 kb on + strandat 866.998 kb on - strandat 867.147 kb on + strandat 867.202 kb on - strandat 867.222 kb on - strand, within Atu0871at 867.234 kb on + strand, within Atu0871at 867.309 kb on + strand, within Atu0871at 867.317 kb on - strand, within Atu0871at 867.407 kb on + strand, within Atu0871at 867.432 kb on - strand, within Atu0871at 867.486 kb on - strand, within Atu0871at 867.488 kb on + strand, within Atu0871at 867.548 kb on + strand, within Atu0871at 867.595 kb on + strand, within Atu0871at 867.597 kb on + strand, within Atu0871at 867.657 kb on - strand, within Atu0871at 867.699 kb on + strand, within Atu0871at 867.701 kb on - strand, within Atu0871

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Per-strain Table

Position Strand Gene LocusTag Fraction Ferulic Acid 1.25 mM
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865,039 - Atu0868 0.22 +0.6
865,047 + Atu0868 0.23 -0.1
865,122 + Atu0868 0.34 -0.6
865,138 + Atu0868 0.36 -0.2
865,146 - Atu0868 0.37 -0.7
865,166 + Atu0868 0.40 -0.1
865,169 - Atu0868 0.41 +0.3
865,248 - Atu0868 0.52 -0.1
865,263 + Atu0868 0.54 +0.3
865,263 + Atu0868 0.54 -1.2
865,263 + Atu0868 0.54 +0.4
865,271 - Atu0868 0.55 -0.2
865,276 - Atu0868 0.56 -0.3
865,283 - Atu0868 0.57 -0.2
865,325 + Atu0868 0.63 -0.5
865,333 - Atu0868 0.64 -0.3
865,412 + Atu0868 0.75 +0.0
865,430 - Atu0868 0.77 -0.0
865,441 - Atu0868 0.79 +0.0
865,635 + +0.1
865,635 + +0.8
865,643 - -0.2
865,661 + -0.6
865,694 + Atu0869 0.15 -0.6
865,694 + Atu0869 0.15 -0.2
865,694 + Atu0869 0.15 +0.1
865,700 - Atu0869 0.17 +0.1
865,702 - Atu0869 0.17 +0.1
865,704 + Atu0869 0.18 -0.0
865,709 + Atu0869 0.19 +0.6
865,717 - Atu0869 0.21 -1.6
865,733 - Atu0869 0.26 -0.3
865,757 - Atu0869 0.32 +0.1
865,781 - Atu0869 0.39 -0.4
865,794 - Atu0869 0.42 -0.4
865,806 - Atu0869 0.46 +0.2
865,949 + Atu0869 0.84 +1.8
865,949 - Atu0869 0.84 +0.7
865,980 - +0.6
865,994 - +0.0
866,010 + -0.4
866,122 - Atu0870 0.14 +0.4
866,216 + Atu0870 0.26 +0.0
866,236 - Atu0870 0.29 +0.1
866,288 + Atu0870 0.36 +0.6
866,338 - Atu0870 0.42 -0.0
866,470 - Atu0870 0.59 -0.6
866,482 + Atu0870 0.61 +1.3
866,498 - Atu0870 0.63 +0.0
866,598 - Atu0870 0.76 -0.9
866,660 - Atu0870 0.84 +1.0
866,669 + Atu0870 0.85 +0.2
866,811 + -0.1
866,982 + -0.2
866,998 - +0.0
867,147 + +1.4
867,202 - -0.4
867,222 - Atu0871 0.12 +0.3
867,234 + Atu0871 0.13 +0.4
867,309 + Atu0871 0.22 +0.1
867,317 - Atu0871 0.23 -0.4
867,407 + Atu0871 0.33 -0.1
867,432 - Atu0871 0.36 +0.0
867,486 - Atu0871 0.42 +0.2
867,488 + Atu0871 0.42 +0.0
867,548 + Atu0871 0.49 +0.0
867,595 + Atu0871 0.54 -0.4
867,597 + Atu0871 0.54 +0.5
867,657 - Atu0871 0.61 +0.4
867,699 + Atu0871 0.66 +0.8
867,701 - Atu0871 0.66 +0.5

Or see this region's nucleotide sequence