Experiment: Guaiacol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0916 and Atu0917 are separated by 302 nucleotides Atu0917 and Atu0918 overlap by 8 nucleotides Atu0918 and Atu0919 are separated by 21 nucleotides
Atu0916: Atu0916 - transcriptional regulator, at 905,301 to 905,729
Atu0916
Atu0917: Atu0917 - hypothetical protein, at 906,032 to 906,454
Atu0917
Atu0918: Atu0918 - hypothetical protein, at 906,447 to 907,283
Atu0918
Atu0919: Atu0919 - hypothetical protein, at 907,305 to 907,721
Atu0919
Position (kb) 906
907 Strain fitness (log2 ratio) -1
0
1 at 905.221 kb on + strand at 905.433 kb on + strand, within Atu0916 at 905.772 kb on + strand at 905.788 kb on - strand at 906.142 kb on + strand, within Atu0917 at 906.270 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.324 kb on - strand, within Atu0917 at 906.351 kb on + strand, within Atu0917 at 906.383 kb on - strand, within Atu0917 at 906.385 kb on + strand, within Atu0917 at 906.393 kb on - strand, within Atu0917 at 906.403 kb on - strand, within Atu0917 at 906.711 kb on - strand, within Atu0918 at 906.742 kb on + strand, within Atu0918 at 906.747 kb on + strand, within Atu0918 at 906.750 kb on - strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.800 kb on + strand, within Atu0918 at 906.808 kb on - strand, within Atu0918 at 906.832 kb on + strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 906.999 kb on - strand, within Atu0918 at 907.001 kb on + strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.004 kb on - strand, within Atu0918 at 907.083 kb on + strand, within Atu0918 at 907.173 kb on - strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.175 kb on + strand, within Atu0918 at 907.220 kb on + strand at 907.220 kb on + strand at 907.228 kb on - strand at 907.228 kb on - strand at 907.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Guaiacol 5 mM remove 905,221 + -0.6 905,433 + Atu0916 0.31 -1.4 905,772 + +0.2 905,788 - +0.1 906,142 + Atu0917 0.26 +0.6 906,270 - Atu0917 0.56 -0.5 906,324 - Atu0917 0.69 -0.2 906,324 - Atu0917 0.69 -0.0 906,351 + Atu0917 0.75 -0.6 906,383 - Atu0917 0.83 +0.1 906,385 + Atu0917 0.83 -0.8 906,393 - Atu0917 0.85 -0.0 906,403 - Atu0917 0.88 -0.1 906,711 - Atu0918 0.32 -0.6 906,742 + Atu0918 0.35 +0.4 906,747 + Atu0918 0.36 +0.4 906,750 - Atu0918 0.36 +0.6 906,800 + Atu0918 0.42 -0.0 906,800 + Atu0918 0.42 +0.2 906,808 - Atu0918 0.43 -0.3 906,832 + Atu0918 0.46 +0.7 906,999 - Atu0918 0.66 +0.0 906,999 - Atu0918 0.66 -0.7 907,001 + Atu0918 0.66 +0.7 907,004 - Atu0918 0.67 -0.2 907,004 - Atu0918 0.67 -0.3 907,083 + Atu0918 0.76 +0.0 907,173 - Atu0918 0.87 -0.2 907,175 + Atu0918 0.87 -0.1 907,175 + Atu0918 0.87 -0.0 907,220 + -1.6 907,220 + +0.5 907,228 - -0.1 907,228 - -0.6 907,239 - -0.2
Or see this region's nucleotide sequence