Experiment: Guaiacol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5460 and Atu5461 are separated by 10 nucleotides Atu5461 and Atu5462 are separated by 2 nucleotides Atu5462 and Atu5463 overlap by 4 nucleotides Atu5463 and Atu5464 overlap by 4 nucleotides
Atu5460: Atu5460 - ABC transporter membrane spanning protein, at 452,862 to 453,788
Atu5460
Atu5461: Atu5461 - ABC transporter membrane spanning protein, at 453,799 to 454,629
Atu5461
Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714
Atu5462
Atu5463: Atu5463 - putative UDP-glucose 4-epimerase, at 455,711 to 456,694
Atu5463
Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373
Atu5464
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.642 kb on + strand, within Atu5460 at 453.672 kb on - strand, within Atu5460 at 453.717 kb on + strand at 453.726 kb on + strand at 453.820 kb on + strand at 453.829 kb on + strand at 453.863 kb on - strand at 453.983 kb on - strand, within Atu5461 at 454.006 kb on - strand, within Atu5461 at 454.100 kb on + strand, within Atu5461 at 454.103 kb on - strand, within Atu5461 at 454.108 kb on - strand, within Atu5461 at 454.124 kb on - strand, within Atu5461 at 454.267 kb on + strand, within Atu5461 at 454.298 kb on + strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.348 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.404 kb on - strand, within Atu5461 at 454.416 kb on - strand, within Atu5461 at 454.418 kb on + strand, within Atu5461 at 454.423 kb on + strand, within Atu5461 at 454.426 kb on - strand, within Atu5461 at 454.427 kb on + strand, within Atu5461 at 454.431 kb on - strand, within Atu5461 at 454.498 kb on - strand, within Atu5461 at 454.555 kb on + strand at 454.578 kb on - strand at 454.728 kb on + strand at 454.842 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 455.068 kb on + strand, within Atu5462 at 455.122 kb on - strand, within Atu5462 at 455.125 kb on + strand, within Atu5462 at 455.168 kb on + strand, within Atu5462 at 455.221 kb on - strand, within Atu5462 at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.631 kb on - strand at 455.631 kb on - strand at 455.638 kb on + strand at 455.638 kb on + strand at 455.716 kb on - strand at 455.793 kb on + strand at 455.801 kb on - strand at 455.853 kb on + strand, within Atu5463 at 455.907 kb on + strand, within Atu5463 at 456.000 kb on + strand, within Atu5463 at 456.056 kb on + strand, within Atu5463 at 456.079 kb on - strand, within Atu5463 at 456.085 kb on + strand, within Atu5463 at 456.120 kb on - strand, within Atu5463 at 456.207 kb on - strand, within Atu5463 at 456.212 kb on - strand, within Atu5463 at 456.267 kb on + strand, within Atu5463 at 456.326 kb on + strand, within Atu5463 at 456.410 kb on - strand, within Atu5463 at 456.422 kb on - strand, within Atu5463 at 456.426 kb on + strand, within Atu5463 at 456.436 kb on - strand, within Atu5463 at 456.448 kb on + strand, within Atu5463
Per-strain Table
Position Strand Gene LocusTag Fraction Guaiacol 5 mM remove 453,642 + Atu5460 0.84 -0.1 453,672 - Atu5460 0.87 -0.2 453,717 + -0.0 453,726 + +0.5 453,820 + -0.2 453,829 + +0.1 453,863 - -0.0 453,983 - Atu5461 0.22 -0.1 454,006 - Atu5461 0.25 -0.3 454,100 + Atu5461 0.36 +0.5 454,103 - Atu5461 0.37 +0.2 454,108 - Atu5461 0.37 +0.2 454,124 - Atu5461 0.39 +0.0 454,267 + Atu5461 0.56 +0.1 454,298 + Atu5461 0.60 +0.2 454,348 - Atu5461 0.66 -0.6 454,348 - Atu5461 0.66 -0.2 454,404 - Atu5461 0.73 +0.1 454,404 - Atu5461 0.73 +0.6 454,404 - Atu5461 0.73 +0.4 454,416 - Atu5461 0.74 -0.2 454,418 + Atu5461 0.74 -0.1 454,423 + Atu5461 0.75 -0.9 454,426 - Atu5461 0.75 -0.5 454,427 + Atu5461 0.76 -0.2 454,431 - Atu5461 0.76 +0.1 454,498 - Atu5461 0.84 +0.2 454,555 + -0.2 454,578 - +0.4 454,728 + +0.3 454,842 + Atu5462 0.19 +0.1 454,952 + Atu5462 0.30 +0.5 454,952 + Atu5462 0.30 -1.0 454,954 - Atu5462 0.30 -0.5 454,954 - Atu5462 0.30 -0.4 455,068 + Atu5462 0.40 -0.2 455,122 - Atu5462 0.45 -2.6 455,125 + Atu5462 0.46 -0.3 455,168 + Atu5462 0.49 -1.0 455,221 - Atu5462 0.54 +0.3 455,623 + +0.2 455,623 + +0.2 455,623 + -0.1 455,623 + -0.0 455,623 + +0.5 455,631 - +0.5 455,631 - +0.0 455,638 + -0.1 455,638 + -0.6 455,716 - -0.2 455,793 + +0.0 455,801 - -0.5 455,853 + Atu5463 0.14 +0.4 455,907 + Atu5463 0.20 +0.9 456,000 + Atu5463 0.29 +0.1 456,056 + Atu5463 0.35 -1.0 456,079 - Atu5463 0.37 +0.1 456,085 + Atu5463 0.38 +0.1 456,120 - Atu5463 0.42 +0.2 456,207 - Atu5463 0.50 -0.2 456,212 - Atu5463 0.51 +0.8 456,267 + Atu5463 0.57 -0.0 456,326 + Atu5463 0.62 -0.0 456,410 - Atu5463 0.71 -0.2 456,422 - Atu5463 0.72 +0.4 456,426 + Atu5463 0.73 +0.6 456,436 - Atu5463 0.74 +1.0 456,448 + Atu5463 0.75 +0.2
Or see this region's nucleotide sequence