Strain Fitness in Agrobacterium fabrum C58 around Atu3273

Experiment: Guaiacol 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3272 and Atu3273 are separated by 266 nucleotidesAtu3273 and Atu3274 overlap by 4 nucleotides Atu3272: Atu3272 - exopolysaccharide export protein, at 291,854 to 293,050 Atu3272 Atu3273: Atu3273 - HlyD family secretion protein, at 293,317 to 294,594 Atu3273 Atu3274: Atu3274 - AcrB/AcrD/AcrF family protein, at 294,591 to 297,731 Atu3274 Position (kb) 293 294 295Strain fitness (log2 ratio) -1 0 1 2 3at 292.325 kb on - strand, within Atu3272at 292.437 kb on - strand, within Atu3272at 292.526 kb on - strand, within Atu3272at 292.564 kb on + strand, within Atu3272at 292.595 kb on - strand, within Atu3272at 292.627 kb on + strand, within Atu3272at 292.632 kb on + strand, within Atu3272at 292.759 kb on + strand, within Atu3272at 292.759 kb on + strand, within Atu3272at 292.767 kb on - strand, within Atu3272at 292.767 kb on - strand, within Atu3272at 292.767 kb on - strand, within Atu3272at 293.004 kb on - strandat 293.117 kb on + strandat 293.254 kb on - strandat 293.336 kb on + strandat 293.469 kb on - strand, within Atu3273at 293.521 kb on + strand, within Atu3273at 293.529 kb on - strand, within Atu3273at 293.531 kb on - strand, within Atu3273at 293.544 kb on + strand, within Atu3273at 293.608 kb on - strand, within Atu3273at 293.611 kb on - strand, within Atu3273at 293.638 kb on + strand, within Atu3273at 293.645 kb on - strand, within Atu3273at 293.736 kb on - strand, within Atu3273at 293.754 kb on + strand, within Atu3273at 293.756 kb on - strand, within Atu3273at 293.756 kb on - strand, within Atu3273at 293.762 kb on - strand, within Atu3273at 293.780 kb on + strand, within Atu3273at 293.790 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.862 kb on + strand, within Atu3273at 293.865 kb on - strand, within Atu3273at 293.865 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.870 kb on - strand, within Atu3273at 293.921 kb on + strand, within Atu3273at 293.926 kb on + strand, within Atu3273at 293.926 kb on + strand, within Atu3273at 293.936 kb on + strand, within Atu3273at 294.002 kb on + strand, within Atu3273at 294.065 kb on + strand, within Atu3273at 294.065 kb on + strand, within Atu3273at 294.153 kb on + strand, within Atu3273at 294.198 kb on + strand, within Atu3273at 294.207 kb on - strand, within Atu3273at 294.282 kb on - strand, within Atu3273at 294.377 kb on - strand, within Atu3273at 294.384 kb on - strand, within Atu3273at 294.489 kb on - strandat 294.670 kb on + strandat 294.683 kb on + strandat 294.696 kb on - strandat 294.786 kb on - strandat 294.805 kb on - strandat 294.814 kb on + strandat 294.964 kb on + strand, within Atu3274at 295.002 kb on + strand, within Atu3274at 295.053 kb on - strand, within Atu3274at 295.102 kb on + strand, within Atu3274at 295.123 kb on - strand, within Atu3274at 295.123 kb on - strand, within Atu3274at 295.130 kb on + strand, within Atu3274at 295.130 kb on + strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.138 kb on - strand, within Atu3274at 295.159 kb on - strand, within Atu3274at 295.166 kb on + strand, within Atu3274at 295.194 kb on - strand, within Atu3274at 295.244 kb on + strand, within Atu3274at 295.292 kb on + strand, within Atu3274at 295.335 kb on - strand, within Atu3274at 295.426 kb on + strand, within Atu3274

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Per-strain Table

Position Strand Gene LocusTag Fraction Guaiacol 5 mM
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292,325 - Atu3272 0.39 +0.3
292,437 - Atu3272 0.49 -0.5
292,526 - Atu3272 0.56 -0.5
292,564 + Atu3272 0.59 +0.0
292,595 - Atu3272 0.62 -0.4
292,627 + Atu3272 0.65 +0.1
292,632 + Atu3272 0.65 -0.1
292,759 + Atu3272 0.76 +0.4
292,759 + Atu3272 0.76 +0.2
292,767 - Atu3272 0.76 +0.6
292,767 - Atu3272 0.76 +0.6
292,767 - Atu3272 0.76 +0.0
293,004 - -0.7
293,117 + +0.0
293,254 - -0.0
293,336 + +1.3
293,469 - Atu3273 0.12 -0.0
293,521 + Atu3273 0.16 +0.4
293,529 - Atu3273 0.17 +0.2
293,531 - Atu3273 0.17 -0.1
293,544 + Atu3273 0.18 -0.7
293,608 - Atu3273 0.23 -0.8
293,611 - Atu3273 0.23 -0.0
293,638 + Atu3273 0.25 -0.2
293,645 - Atu3273 0.26 -0.2
293,736 - Atu3273 0.33 +0.0
293,754 + Atu3273 0.34 -0.8
293,756 - Atu3273 0.34 -0.0
293,756 - Atu3273 0.34 +0.1
293,762 - Atu3273 0.35 +0.8
293,780 + Atu3273 0.36 -0.2
293,790 + Atu3273 0.37 -0.1
293,862 + Atu3273 0.43 -0.1
293,862 + Atu3273 0.43 +1.2
293,862 + Atu3273 0.43 +0.2
293,862 + Atu3273 0.43 -0.1
293,862 + Atu3273 0.43 +0.2
293,862 + Atu3273 0.43 +0.6
293,862 + Atu3273 0.43 +0.0
293,862 + Atu3273 0.43 -1.4
293,862 + Atu3273 0.43 +0.1
293,865 - Atu3273 0.43 -0.3
293,865 - Atu3273 0.43 -0.1
293,870 - Atu3273 0.43 +0.5
293,870 - Atu3273 0.43 -1.1
293,870 - Atu3273 0.43 -0.2
293,870 - Atu3273 0.43 +0.8
293,870 - Atu3273 0.43 +0.4
293,921 + Atu3273 0.47 -0.3
293,926 + Atu3273 0.48 -0.2
293,926 + Atu3273 0.48 +0.1
293,936 + Atu3273 0.48 +0.2
294,002 + Atu3273 0.54 +0.2
294,065 + Atu3273 0.59 +0.6
294,065 + Atu3273 0.59 -0.0
294,153 + Atu3273 0.65 -0.2
294,198 + Atu3273 0.69 -0.8
294,207 - Atu3273 0.70 +0.4
294,282 - Atu3273 0.76 +0.1
294,377 - Atu3273 0.83 +0.1
294,384 - Atu3273 0.83 -0.4
294,489 - -0.1
294,670 + -1.0
294,683 + +3.0
294,696 - -0.1
294,786 - -0.4
294,805 - +0.8
294,814 + -0.2
294,964 + Atu3274 0.12 +0.2
295,002 + Atu3274 0.13 -0.2
295,053 - Atu3274 0.15 +0.5
295,102 + Atu3274 0.16 -0.3
295,123 - Atu3274 0.17 +0.7
295,123 - Atu3274 0.17 -0.4
295,130 + Atu3274 0.17 -0.4
295,130 + Atu3274 0.17 +0.2
295,138 - Atu3274 0.17 +0.9
295,138 - Atu3274 0.17 -0.2
295,138 - Atu3274 0.17 +0.6
295,159 - Atu3274 0.18 +0.3
295,166 + Atu3274 0.18 +0.1
295,194 - Atu3274 0.19 -0.1
295,244 + Atu3274 0.21 -0.4
295,292 + Atu3274 0.22 -0.2
295,335 - Atu3274 0.24 -0.1
295,426 + Atu3274 0.27 -0.1

Or see this region's nucleotide sequence