Strain Fitness in Agrobacterium fabrum C58 around Atu0689

Experiment: Dodecyl Sulfate 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0687 and Atu0688 are separated by 54 nucleotidesAtu0688 and Atu0689 are separated by 71 nucleotidesAtu0689 and Atu0690 overlap by 20 nucleotidesAtu0690 and Atu0691 are separated by 86 nucleotides Atu0687: Atu0687 - hypothetical protein, at 683,918 to 684,547 Atu0687 Atu0688: Atu0688 - cytidine and deoxycytidylate deaminase, at 684,602 to 685,060 Atu0688 Atu0689: Atu0689 - ribosomal large subunit pseudouridine synthase B, at 685,132 to 687,141 Atu0689 Atu0690: Atu0690 - hypothetical protein, at 687,122 to 687,679 Atu0690 Atu0691: Atu0691 - hypothetical protein, at 687,766 to 688,692 Atu0691 Position (kb) 685 686 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 684.162 kb on - strand, within Atu0687at 684.180 kb on - strand, within Atu0687at 684.352 kb on + strand, within Atu0687at 684.588 kb on - strandat 685.075 kb on + strandat 685.106 kb on - strandat 685.116 kb on - strandat 685.242 kb on + strandat 685.250 kb on - strandat 685.359 kb on - strand, within Atu0689at 685.482 kb on + strand, within Atu0689at 685.668 kb on + strand, within Atu0689at 685.729 kb on + strand, within Atu0689at 685.799 kb on + strand, within Atu0689at 685.837 kb on - strand, within Atu0689at 685.886 kb on + strand, within Atu0689at 685.973 kb on + strand, within Atu0689at 686.079 kb on + strand, within Atu0689at 686.127 kb on - strand, within Atu0689at 686.156 kb on + strand, within Atu0689at 686.246 kb on - strand, within Atu0689at 686.433 kb on + strand, within Atu0689at 686.441 kb on - strand, within Atu0689at 686.445 kb on + strand, within Atu0689at 686.453 kb on - strand, within Atu0689at 686.477 kb on - strand, within Atu0689at 686.636 kb on + strand, within Atu0689at 686.689 kb on - strand, within Atu0689at 686.786 kb on - strand, within Atu0689at 686.843 kb on + strand, within Atu0689at 686.917 kb on - strand, within Atu0689at 686.931 kb on + strand, within Atu0689at 686.939 kb on - strand, within Atu0689at 686.939 kb on - strand, within Atu0689at 687.107 kb on + strandat 687.150 kb on + strandat 687.158 kb on - strandat 687.368 kb on - strand, within Atu0690at 687.498 kb on + strand, within Atu0690at 687.600 kb on + strand, within Atu0690at 687.604 kb on - strand, within Atu0690at 687.674 kb on - strandat 687.756 kb on + strandat 687.854 kb on + strandat 687.943 kb on + strand, within Atu0691at 687.951 kb on - strand, within Atu0691at 687.979 kb on - strand, within Atu0691at 687.984 kb on + strand, within Atu0691at 688.104 kb on + strand, within Atu0691at 688.128 kb on + strand, within Atu0691at 688.133 kb on + strand, within Atu0691at 688.136 kb on - strand, within Atu0691

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Per-strain Table

Position Strand Gene LocusTag Fraction Dodecyl Sulfate 0.2 mM
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684,162 - Atu0687 0.39 -3.5
684,180 - Atu0687 0.42 -0.6
684,352 + Atu0687 0.69 -4.3
684,588 - -1.0
685,075 + +0.5
685,106 - +0.4
685,116 - -0.1
685,242 + +0.2
685,250 - +0.5
685,359 - Atu0689 0.11 +0.3
685,482 + Atu0689 0.17 -0.7
685,668 + Atu0689 0.27 -0.2
685,729 + Atu0689 0.30 +0.2
685,799 + Atu0689 0.33 -1.6
685,837 - Atu0689 0.35 +0.8
685,886 + Atu0689 0.38 -0.2
685,973 + Atu0689 0.42 +0.1
686,079 + Atu0689 0.47 +0.0
686,127 - Atu0689 0.50 -0.2
686,156 + Atu0689 0.51 -0.9
686,246 - Atu0689 0.55 +0.1
686,433 + Atu0689 0.65 -0.1
686,441 - Atu0689 0.65 -0.0
686,445 + Atu0689 0.65 -0.3
686,453 - Atu0689 0.66 +0.8
686,477 - Atu0689 0.67 -0.8
686,636 + Atu0689 0.75 +0.3
686,689 - Atu0689 0.77 -1.3
686,786 - Atu0689 0.82 +0.2
686,843 + Atu0689 0.85 -0.2
686,917 - Atu0689 0.89 -0.1
686,931 + Atu0689 0.90 -0.1
686,939 - Atu0689 0.90 +1.3
686,939 - Atu0689 0.90 -0.3
687,107 + -0.3
687,150 + +0.7
687,158 - +0.1
687,368 - Atu0690 0.44 +3.7
687,498 + Atu0690 0.67 +1.8
687,600 + Atu0690 0.86 -0.2
687,604 - Atu0690 0.86 -0.3
687,674 - -0.1
687,756 + -0.3
687,854 + +0.0
687,943 + Atu0691 0.19 +0.2
687,951 - Atu0691 0.20 -0.2
687,979 - Atu0691 0.23 -0.3
687,984 + Atu0691 0.24 +0.1
688,104 + Atu0691 0.36 -0.3
688,128 + Atu0691 0.39 +0.0
688,133 + Atu0691 0.40 -0.1
688,136 - Atu0691 0.40 -0.4

Or see this region's nucleotide sequence